Bufo bufo (common toad): 121009459
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Entry
121009459 CDS
T07950
Symbol
HDAC6
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
bbuf
Bufo bufo (common toad)
Brite
KEGG Orthology (KO) [BR:
bbuf00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
bbuf01009
]
121009459 (HDAC6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbuf03019
]
121009459 (HDAC6)
04131 Membrane trafficking [BR:
bbuf04131
]
121009459 (HDAC6)
03036 Chromosome and associated proteins [BR:
bbuf03036
]
121009459 (HDAC6)
Enzymes [BR:
bbuf01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
121009459 (HDAC6)
Protein phosphatases and associated proteins [BR:
bbuf01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
121009459 (HDAC6)
Messenger RNA biogenesis [BR:
bbuf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
121009459 (HDAC6)
Membrane trafficking [BR:
bbuf04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
121009459 (HDAC6)
Chromosome and associated proteins [BR:
bbuf03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
121009459 (HDAC6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
Pyridox_oxase_2
Motif
Other DBs
NCBI-GeneID:
121009459
NCBI-ProteinID:
XP_040298520
LinkDB
All DBs
Position
8:complement(11318592..11347799)
Genome browser
AA seq
1203 aa
AA seq
DB search
MSSPRDHKSPGGQGRGGSPSLSTTKKPGKKGQTSPQGGPSLQEVKKRAHRMRKTPEREIC
DQLDGLHLGTEAPAEGSGLVYDDRMTQFFCLWDDKFPECPTRLLAVKEKLVEYGLLDRCL
PVPAREASEEELLLVHSPDYVELMKSTQKMTEEELRALSDNYDSVYLHPMSFTASRVAAG
SVLQLIDKVMRREVRNGLAVVRPPGHHAHTDQMNGYCMFNHLAIAARYAQHQHGVKRVLI
VDWDVHHGQGTQFIFEDDPSVLYFSIHRYENGEFWPHLVESSSAAVGKEKGERYNINVPW
NKTGMNDADYITTFLHLLLPVSYEFQPQLVLVAAGYDSVVGDPKGEMSATPACFAHLTHL
LMCLAEGRVVLALEGGYNMRSMAEGVCASLKVLLGDPCPSLRQPFTPCESSLQSISGAIS
VHRKYWRCLQDQDFPFKIETGDDKLKTEESSDRSFPEESEEDNLKVTLDTAMQEVMRKLP
ERCTGLVYDEQMMEHYNIWDSGHPELPLRIARIFKHHKEMGLVDRCARLPHRLATTKELQ
MCHSLPYIKTFEESSRMKPRDLHRMGSQYNSIFINNRSYNSARLAAGSTFSVVEAVLRGE
VQNGVCIVRPPGHHAEPGAACGFCFFNNVALAARYAQSLQSPSDPPLRVMILDWDIHHGN
GTQHIFQDDASVLYVSLHRYDNGIFFPSSEDAAHDKVGSGPGEGFNVNIPWNGGKMGDTE
YLLAFHRIVMPIAYEFNPQLVLVSAGFDAARGDPLGGCCVSPEGYAHMTHLLMGLAGGKV
VVVLEGGYNLTSISESMSMCTRTLLGDPLPFISDLHAPRPAALHAISSVLGVHHKYWRSL
CINVRPPVPSEEASEVLFSPPKMQPHKDRETGLSSPQHRSPGKQIVSTPSPPRPDLRGQE
EEHLTPKQRPSLSTIESAEAGSPEVRTLVIQDVDDSKKDSILEDLGEDLVPMRDGSVSSL
SAQDEDVDSCAKPDQSYEGESLELVIELQVSDQTPEKQRSKPATESSVEELLRDLHLGED
TKSVDVRSPDNDSKPVGGARKKTSMGRSSGGAQVGSASADKQQDPAPPDEAAGGDRLFCE
LDMDPSLGFSGELFTVTPLPWCPHLDSVQVLPPSGLDVTEPCAECGTQVENWACLTCYQV
LCGRYVSQHMMCHGVSCGHDVVLSFSDLSVWCYSCDAYIHNEVLIPAKQSAYRSKFGEDM
PGV
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
atgtcctctcctcgagatcataagtcacccggaggtcaaggaagaggtggctcccccagt
ctctctactacgaagaagcctgggaagaaggggcagacatcgcctcaaggtggccccagc
ctacaggaagtaaagaagagggcccaccgcatgaggaaaactcccgaaagagagatttgt
gaccaattggatggattgcacctgggtacagaggctcctgcagaaggatccggcctggtg
tatgatgatcgaatgacacaatttttctgtctctgggacgacaagtttcccgagtgtcca
actcgtcttttggctgtgaaggagaagttggtggagtacgggctgctggaccgctgcctg
ccagtgccagcacgggaagcatctgaggaggagctcttgctggttcacagcccagactac
gtagagttaatgaaatccacccagaaaatgacagaggaagagctcagagcactgtcagac
aactacgactctgtctacctgcacccaatgtcgttcactgcttcccgcgtggccgccggg
tctgtactacagctaattgataaggtcatgagaagggaagtccgaaatgggttggcagtg
gtgaggcctccggggcaccacgctcatactgaccagatgaatggttactgcatgtttaac
cacttggccatcgccgccagatacgcccagcaccagcacggcgtaaagagggttctcatc
gtggactgggatgtacatcatggacaaggcacgcagttcatatttgaggacgacccgagt
gtcctttatttttcaatccatcgctatgaaaatggagaattttggccacatctggtggag
tcttccagcgctgccgtgggcaaggagaagggcgagcgatataacataaatgtgccgtgg
aataagacgggaatgaatgacgcggattatatcacaacgttcctgcacctgctcctgccc
gtctcctacgagttccagccgcagcttgtgttggttgctgcaggatacgactcagtggtc
ggagatcctaagggggagatgtccgccaccccagcatgctttgcacaccttacccacttg
ctcatgtgtttggctgaaggaagagtagtgctcgctctagagggaggatacaacatgcgc
tctatggcagaaggtgtctgcgcctcattgaaagtgctgctcggggacccatgtccgagc
ttacgtcagcctttcacaccctgtgagagttctctgcagtccatctctggcgccatatct
gtccacaggaaatactggcggtgtctgcaggaccaggattttccctttaagatcgagaca
ggagatgataaactaaaaacagaggaaagcagtgaccgctccttccccgaggagtcagaa
gaggataacctgaaggtcaccttggacactgcgatgcaggaggtgatgaggaagttaccg
gagaggtgcacgggtctggtgtatgatgagcagatgatggagcattataacatatgggac
agcggtcaccctgagctcccgctgagaattgcgcggattttcaagcatcacaaggagatg
gggctcgtagatcgctgcgctcgtcttccccatcgccttgccactactaaggagctacag
atgtgtcatagcctcccttacattaagacgtttgaagaaagctcacgaatgaaaccaaga
gacctgcacaggatgggctctcagtacaactccatcttcatcaacaacaggtcgtataac
agcgcccgcctggccgcgggctctacgttcagcgtggtggaggccgtactgaggggagag
gtccaaaatggagtttgcatagtccgccctccgggtcaccatgccgagccaggtgcggcc
tgtgggttttgcttctttaacaatgtcgccttggccgcgcgatacgcccaaagtctgcag
agcccgtcggaccctcctctaagggtgatgattttggactgggatatccaccacggtaac
ggtactcagcatatattccaggatgatgccagcgtcctgtatgtgtcgctccatcgctat
gataacggcatcttcttcccatcttctgaggacgccgcacacgacaaggttgggagcggt
ccaggcgaaggatttaatgtgaacatcccctggaatggaggaaagatgggagatacggag
tacctgctcgccttccacagaatcgtcatgcccatagcttacgagtttaatccacaactt
gttttggtctctgccggattcgacgccgctcgcggtgacccgcttggaggttgctgcgtc
agtccagaaggctacgcccacatgacgcatctcctgatggggctggcagggggcaaggta
gtggtcgtgcttgagggcggatataaccttacgtcgatctctgaatccatgtccatgtgt
acccggacactgctgggtgatccacttcccttcatatctgacctgcacgccccccgtcct
gcggccctgcatgctatctccagtgttcttggagtacatcataaatattggcgtagcctg
tgtataaacgttagacctcctgtaccttctgaggaggcctcggaggtcctgttctcccca
ccgaagatgcagccacataaggatagggagactggattatcatcacctcaacacagaagt
cctggaaagcagattgtatctactccttctcctccgagaccagatctaagggggcaagaa
gaggaacatctgacaccaaagcaaagaccatcactttcgaccatcgagagtgcagaggct
ggctctccggaagttaggactttggtgatccaggatgtagatgacagtaagaaggactcc
atattggaggaccttggagaagatttggtgcctatgagggacggttcagtctccagtctt
tctgctcaggacgaggatgtggacagttgtgccaaaccagatcagtcatatgaaggagaa
tcgctggaactcgtcattgagttgcaggtgtctgaccagaccccagagaagcagaggtct
aaacctgcgaccgagagctcggtggaggagcttttgagagacttgcacttgggagaggat
acgaaaagtgtagacgtcaggtctccagacaatgatagcaagccagtcggtggagcaagg
aagaaaacctccatggggagatcgtcaggaggagcgcaggtagggtctgcttctgcagat
aagcagcaggatccggcgccgcccgatgaagctgctgggggtgatcgtttgttctgtgaa
cttgacatggacccatcactcggattctctggggaattatttaccgtaacacccttgccc
tggtgccctcacttagattcagtacaagtgctgccccctagtgggcttgacgtgacagag
ccgtgcgcagagtgtggcacccaggtggagaactgggcctgtctgacgtgttaccaggtt
ctgtgcggaaggtacgtctcgcagcatatgatgtgtcacggagtctcctgcggccatgat
gtcgtcctcagcttctcggacctctccgtgtggtgctatagctgtgacgcctacatccat
aacgaggttctcattccagcgaagcaatccgcttaccgttccaagtttggcgaggatatg
ccaggagtctaa
DBGET
integrated database retrieval system
