Brevundimonas bullata: U0030_09520
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Entry
U0030_09520 CDS
T10190
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bbul Brevundimonas bullata
Pathway
bbul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U0030_09520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbul03019
]
U0030_09520
Messenger RNA biogenesis [BR:
bbul03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
U0030_09520
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
WQE35538
LinkDB
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Position
complement(1934111..1935787)
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AA seq
558 aa
AA seq
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MTKKTQNDELVFLPLGGSNEIGMNLNAYGFGPAHDRKWILVDVGVTFGDPSTPGVDVIVP
DPSFLEGETILGIVLTHAHEDHIGALGWLWPRIQAPLYATPFTAYLIREKLRDANILDDV
ELNEVPLGGAVNLGPFDVTYVTLTHSIAEPNGLAIKTPLGTILHTGDWKIDDDPVVGDRT
DVEAIKRLGDEGVLAMVCDSTNVFVEGSAGSEGDVKVAIADLIKDLKGRVAVGCFASNVA
RMDSVIRAAEAAGRRVALAGRSMHRITAAAKSVGMLSDVKPFLSEQEARVWPADEILYLC
TGSQGEVRAALSRVAEGTHPFIRLGKGDHCIFSSRVIPGNELSIGRLQDKMADKGVRLYT
EKDHPGIHVSGHPCRDELRQMYGWARPQIAVPTHGMRRHLMEHAILAKEMLVPETVTPRN
GDMVRLAPGPAAIIDEVPSGRLFVDGGMLVEEAGEALRERRHAASNGVLVVSFAMDKRGK
IVSDIDVRGIGLPGDEDRPLGDILDDLAERAEQAVRKLKGDALDDELVVEQAVSRVLKKA
SQQIWDRRPIVETVILRL
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgacaaagaaaactcaaaacgacgaactcgtcttcctgccgctgggcggctcgaacgag
atcggtatgaacctcaacgcctatggcttcggcccggcgcatgaccgcaaatggattctc
gtcgacgtcggcgtgaccttcggcgatccctccacgcccggcgtggacgtgatcgtgccc
gatccctccttcctggaaggcgagaccatcctgggcatcgtgctgacgcacgcccacgaa
gaccacatcggcgccctgggctggctgtggccgcgcattcaggcaccgctgtatgcgacg
cccttcaccgcctatctgatccgtgaaaagctgcgcgacgccaatatcctcgatgacgtc
gaactgaacgaagtgccgctgggcggtgccgtgaacctgggtccgttcgacgtgacctat
gtgacgctgacccactcgatcgccgagccgaacggtctggcgatcaagacgccgctgggc
acgatcctgcacaccggcgactggaagatcgacgacgatcccgtcgtgggcgaccgcacc
gacgtggaggccatcaagcgtctcggcgacgaaggcgtgctggccatggtctgcgacagc
accaacgtcttcgtggaaggctcagccgggtccgaaggcgatgtgaaggtggcgatcgcc
gacctgatcaaggacctgaagggccgggtcgccgtcggctgcttcgcctccaacgtcgcc
cgcatggacagcgtcatccgcgccgccgaggccgccggccgccgcgtggccctggccggt
cgttcgatgcaccgcatcaccgcggctgccaagtcggtcggcatgctcagcgatgtgaag
cccttcctcagcgagcaggaagcccgcgtctggcccgccgacgagatcctgtatctttgc
accggcagccagggcgaagtccgcgccgccctgtcacgcgtggccgaggggacccacccc
ttcatccggctgggcaagggcgaccactgcatcttctcgtcgcgggtcatccccggcaac
gagctgtcgatcggccgcctgcaagacaagatggccgacaagggcgtgcgcctctacacc
gagaaggaccatccgggcatccacgtctccggccacccgtgccgtgacgaactgcgccag
atgtacggttgggcccgtccgcagattgcggtgccgacccacgggatgcgccgccacctg
atggagcacgccatcctggccaaggaaatgctggtcccggaaaccgtgaccccgcgcaac
ggcgacatggtgcgtctggcccccgggcccgcggccatcatcgacgaagtgccctcgggc
cgtctgttcgtcgatggcggtatgctggtcgaggaggcgggcgaggccctgcgcgagcgt
cggcacgcggcctccaacggcgtcctggtcgtcagcttcgccatggacaagcgcggcaag
atcgtcagcgacatcgacgtgcgcggcatcggcctgccaggcgacgaggaccgtcctctg
ggggacatcctcgacgatctggccgagcgtgccgaacaggcggttcgcaagctgaagggc
gatgcgctggacgatgaactggtggtcgaacaggccgtcagccgcgtgctgaaaaaggcc
agccagcagatctgggaccgtcgtcccatcgtcgaaaccgtcatcctgcgtctgtaa
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