Brevundimonas bullata: U0030_14925
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Entry
U0030_14925 CDS
T10190
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bbul Brevundimonas bullata
Pathway
bbul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U0030_14925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbul03019
]
U0030_14925
Enzymes [BR:
bbul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
U0030_14925
Messenger RNA biogenesis [BR:
bbul03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
U0030_14925
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Utp25_C
HEM4
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
WQE38600
LinkDB
All DBs
Position
3085879..3087351
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AA seq
490 aa
AA seq
DB search
MGLNKALLQALDATGYTTPTPIQAKAIPDVMLGKDLLGIAQTGTGKTAAFALPILHRLAE
NRIAPKPRTTRCLILSPTRELASQIADSFKQYGQHLGFRVAVIFGGVKYGPQERALQQGL
DILVAAPGRLLDHLQQKTLDLSSTEIFVLDEADQMLDLGFIKPIRQIVSRIPAKRQNLFF
SATMPSEIGKLAGELLKDPVKVQVTPQATTVERIKQSVVHIEQGRKRALLTELFSDAAYT
RCLVFTKTKHGADKVAAYLEAGGVEAGAIHGNKSQSQRERALEAFKQGKLRVLVATDIAA
RGIDVDKVTHVVNFELPFVPEAYVHRIGRTARAGAEGTAISFVAGDEMKLLKDIEKVTRQ
KIPAIDRRNDKALGMLDASIMAAGVNSKATLPDREERGGRGGRGGGEGRNRNPRRDGVKP
EGGGQPHRLRKPGPGRAHVERPVAAYDPMAGERPKSSPRSAPAAEPKAVGELKRRSRRPS
NGGKGYSAQG
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgggcctgaacaaggccctcctccaggcgctggacgccaccggctatacgacgccgacg
ccgatccaggccaaggccatccccgacgtcatgctgggcaaggacctgctgggcatcgcc
cagaccggcaccggcaagaccgccgccttcgccctgccgatcctgcatcgcctggccgag
aaccgcatcgcgcccaagccgcgcaccacgcgctgcctgatcctgtcgcccacgcgtgaa
ctggccagccagatcgccgacagcttcaagcagtacggtcagcacctgggcttccgcgtc
gccgtcatcttcggcggcgtcaagtacggcccgcaggaacgcgccctgcaacagggcctg
gacatcctggtcgccgcccccggccgcctgctggaccacctgcaacagaagacgctggac
ctcagctcgacggaaatcttcgtcctcgacgaagccgaccagatgctggacctgggcttc
atcaagcctatccgtcagatcgtcagccgcattccggccaagcgtcagaacctcttcttc
tcggccaccatgccgtcggagatcggcaagctggccggcgagctgctgaaggacccggtc
aaggtccaggtcacgccccaggccaccacggtcgagcgcatcaagcagtcggtcgtccac
atcgaacaaggtcgcaagcgcgccctgctgaccgagctcttctctgacgccgcctatacg
cgctgcctggtcttcaccaagaccaagcacggcgccgacaaggtcgcggcctatctggaa
gccggcggcgtcgaagccggcgccatccacggcaacaagagccagtcgcaacgcgaacgc
gccctggaagccttcaagcagggcaagctgcgcgtcctggtcgccaccgacatcgccgcg
cgcggcatcgacgtggacaaggtcacgcacgtcgtgaacttcgagctgcccttcgtgccg
gaagcctatgtccaccgcattggccgtacggcccgcgcgggcgctgaaggcaccgctatc
agcttcgtcgccggcgacgagatgaagctgctcaaggacatcgaaaaggtcacgcgccag
aagatcccggccatcgaccgtcgtaacgacaaggccctgggcatgctcgacgcctcgatc
atggccgccggcgtcaactccaaggccaccctgcccgaccgtgaagagcgcggcggtcgt
ggcggacgcggcggcggcgaaggccgcaaccgcaacccgcgtcgcgacggcgtcaagccg
gagggcggcggtcagccgcaccgcctgcgcaagccgggtccgggtcgcgcccacgtcgaa
cgtccagtcgccgcctatgaccccatggccggcgaacgtcccaagtcctcgccgcgctcg
gcacctgccgccgaacccaaggccgtcggggaactgaagcgccgcagccgccgcccgtcg
aacggcggcaagggctacagcgcccagggctga
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