Brevundimonas bullata: U0030_16675
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Entry
U0030_16675 CDS
T10190
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bbul Brevundimonas bullata
Pathway
bbul03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bbul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
U0030_16675 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbul03400
]
U0030_16675 (ligD)
Enzymes [BR:
bbul01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
U0030_16675 (ligD)
DNA repair and recombination proteins [BR:
bbul03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
U0030_16675 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
WQE36869
LinkDB
All DBs
Position
3440218..3442755
Genome browser
AA seq
845 aa
AA seq
DB search
MTRSLAMTARGELDSYQAKRNFGATPEPKGRKARARQSGLRYLIQRHAASRLHYDFRIEH
DGVLKSWAVTKAPSRDPHIKRLAVEVEDHPLDYGDFEGTIPAGNYGAGTVQLWDVGEWRP
QDPDVDAAFQKGVVKLTLHGERLKGGWALIRLKTDRGKPSKRPQWLLLKEKDEYAVDGEG
EALAAIDASVVSGRSMTEIAGGDAQWSASKPAVRKAAPRPSKAPPKPLTKPHAFVPIQLC
QIAERPPSTPGWVHEIKFDGYRLQLATGGGRAILRTRKGLDWSERFPELAAEAAHWPDAV
VDGELCALDGDALPDFSALQTAIGEGKTSDLVYFAFDLLFEGAEDLRPLPLSHRKARLQA
WCDRAAKGHAARLRYADHFAARGSAVLEGACRMHLEGVVSKKLDAPYRAGRSATWVKSKC
RGRDEVVIGGWSSDSGARFRSLLVGVMTKGGLRYLGRVGTGYSAALMKTLAPALKAVAAE
RSPFVVTPEADDQLNWVEPVLVAEIEHAGYSKDGILRQAAFKGLREDKTPDDVVAAPQSP
TPVARPGKMIVEGVTISHPDKILWPATDDHAAVSKADLILYYGAVAERLLPHIIDRPVSI
IRAPDGIEGQRFFQRHALTGRHPGLRAIKAGEGRPYVAVTDLSGLIAIGQSGGLELHPWG
CKRGDPETPDQITFDLDPDEGLDFDAVVAAALVLKSRLEALGLTPFVKTTGGKGLHVVVP
IKTETRSRIDWDQAKAFAKGVSEALKADHPDRFTTTLAKKARGGKIFLDYLRNGRAATAV
APWSPRARPGAGIAWPLSWDQVKPGLDPQALNLLSAVDLLQSPDPWKAFRKAAVSLKPSL
KRLGL
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
gtgacgcgttcactggccatgacggcgcgcggtgaactggacagctatcaagccaagcgg
aacttcggcgccacgccggagccaaagggacgcaaggccagggcccgtcagagcggtctg
cgctatctgatccagcgccatgcggcgagccgtctgcactacgactttcgcatcgagcac
gacggcgtgttgaagtcctgggccgtgaccaaggcgccgtcgcgcgatccccacatcaaa
cgcttggcggtcgaggtggaggaccacccccttgattacggcgacttcgaggggaccatt
ccggcgggaaactacggcgcgggcacggtgcagctgtgggacgtcggcgaatggcgccct
caggaccctgatgtggacgcggccttccagaagggcgtcgtcaagctgaccctgcacggc
gaacggctgaagggcggctgggccctgatccggctcaagacagatcgcggcaagccctcc
aagcggccccaatggttgcttctcaaggaaaaggacgaatacgccgtcgacggcgaaggc
gaggccctggccgccatcgacgcctcggtcgtcagcgggcgcagcatgaccgagatcgcg
ggcggggatgcgcagtggagcgcgtccaaaccggctgtgcgcaaggccgcgcccaggccg
tcaaaggcgccgcccaagcctttgaccaagccccacgccttcgtgccgatccaactgtgc
cagatcgccgaacgcccgccctcgacgccgggctgggtgcatgaaatcaagtttgacggc
tatcgtctgcaactggccacgggcggcgggcgcgccatcctgcgcacccgcaagggtctg
gactggagcgagcgctttcccgaactggctgccgaggcggcccattggcccgacgcggtg
gtcgacggtgagctgtgcgccctggacggcgacgccctgccggacttttcggccctgcag
accgcgatcggcgagggcaagacgagcgacctggtctatttcgctttcgacctgctgttc
gagggcgccgaggacctgcgccccctgccgctgtcgcaccgcaaggcgcggctgcaggcc
tggtgcgaccgggcggcgaagggtcacgccgcgcgcctgcgctacgccgaccatttcgcc
gcgcgaggatcggcggttctggaaggcgcctgtcgcatgcatctggagggggtcgtctcc
aagaagctggacgccccctatcgcgcgggccgctcggccacctgggtcaagtccaagtgc
cgaggccgcgacgaggtcgtgatcggcggctggtcgtccgacagcggagcccgtttccgc
tctctgctggtcggggtgatgaccaagggcggactgcgctatctgggccgggtcgggacg
ggctattcggcggccctgatgaaaaccctggcgccggcgttgaaggcggtcgccgccgaa
cgctcgcccttcgtcgtcacgcctgaggcggacgaccagttgaactgggtcgagcccgtc
ctggtcgccgagatcgaacacgcgggctactccaaggacggcatcctgcgtcaggccgcg
ttcaagggtctgcgcgaggacaagacccctgacgatgtggtcgccgctccgcagtcgccc
acgcctgtcgccagaccgggcaagatgatcgtggagggggtgactatctcccatcccgac
aagatcctgtggcccgcgaccgacgaccatgccgccgtcagcaaggccgatttgatcctc
tattatggggctgtggccgaacggctgctgccccacattatcgaccgcccggtctccatc
atccgcgcgccggacggtatcgaggggcagcgcttctttcagcgccacgccctgacgggg
cgccatcccggtctgcgggcgatcaaggcaggcgaggggcggccctatgtcgcggtcact
gacctcagcggcttgatcgccatcggccagtcaggcgggttggagttgcatccctggggt
tgcaagcggggcgaccccgagaccccggaccagatcaccttcgacctggaccccgatgag
gggttggatttcgacgcggtggtcgccgccgccctcgtgttgaagtcgcgccttgaggcc
ctgggtctgacgcccttcgtcaagaccaccggcggcaaggggctgcacgtggtcgtcccg
atcaagaccgagacccgcagccgcatcgactgggatcaggccaaggccttcgccaagggc
gtgtcggaggcgctgaaggctgatcatcccgaccgcttcaccaccaccctggccaagaag
gcgcggggcggaaagatcttcctcgactatctgcgcaatggccgcgccgccaccgccgtc
gcgccctggtcgccgcgcgcccggcccggcgccgggatcgcttggcctctgtcgtgggat
caggtgaagccggggctggacccccaggccttgaacctgctgtccgccgtagatctgttg
caatcgcctgatccatggaaggcgtttcgcaaggcggccgtgtcgctgaagccgagcctg
aaacgactggggctctaa
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