Buteo buteo (common buzzard): 142026189
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Entry
142026189 CDS
T11399
Symbol
SKIC2
Name
(RefSeq) superkiller complex protein 2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
bbut Buteo buteo (common buzzard)
Pathway
bbut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
142026189 (SKIC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbut03019
]
142026189 (SKIC2)
Enzymes [BR:
bbut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
142026189 (SKIC2)
Messenger RNA biogenesis [BR:
bbut03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
142026189 (SKIC2)
mRNA degradation factors
3'-5' decay
Ski complex
142026189 (SKIC2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
142026189
NCBI-ProteinID:
XP_074875144
LinkDB
All DBs
Position
32:236227..247582
Genome browser
AA seq
1244 aa
AA seq
DB search
MELERIALPPRGPLELPLALLELGCAGRFELLTGPPGPGEAPPPRSTLPQGLPPFALPPV
SELEQRFLGTPEWLPPHQHERARRCWQRAPEPRALFALEPTPVAGGLRAERDPHSGTLRG
FTEELLSDVGLSAKNSLSLRRPPGPPGQSLRGNATNFPFWPGGLDEPSLEQIRTHGDEEE
DVDFETDLLVTPPGLKRGVDYKPPAARVGGPLSLSSLLETLDTFDLGGDEAEGGSGDTQP
PVGGSPPPPLRHADSLEEVLLKEAVEPPAPPPEPPEEQWAIPIDASTPVEDFDKRIPDPA
FKWPFVPDPFQQQAVLCLEQGHSLLVAAHTSAGKTAVAEYAIALAQRHMTRTIYTSPIKA
LSNQKFRDFKTTFGDVGLLTGDVQLRPEASCLIMTTEILRSMLYNGSDVIRELEWVIFDE
VHYINDAERGVVWEEVLIMLPEHVKLILLSATIPNALEFAQWVGRTKRRRLRVISTRQRP
VPLEHFLYTGNSSRTRQQLFLLLDARGNFSTQGYYAAVEAKKERTSKHAQTFGAKQPTMG
GSGPGQDRGVWLALLGLLREREQLPVVAFTFSRSRCDEHADTLGSLDLVSSAEKGRIRLF
FQRCIARLRGSDRQLPQVLRMAELLQRGIGVHHGGVLPLLKEVVEMLFSQGLVKVLFATE
TFAMGVNMPARTVVFDSIRKHDGNNFRDLLPGEYVQMSGRAGRRGLDSTGTVIILCKGPV
PEMADLHRVMLGRPTRLQSQFRLTYSMILNLLRAQALRVEDMMRRSFSEFPLRRDAPAQE
RRVAELQRELAALGEPEAEGAMADLPPYHRAVQGLRQARALLQRRLTESVAGLRALAPGR
VVVVCTPKHRNALGLILQVSSEGSGRTFTTLVLCEKPPEEGGPAVEPPKVPDVPYPEDLL
FTRLFVPEGACGHVLEKLQPGDIGGVTAKTLRVNPERVLQELRPRQGPRPRSEPPGMEVG
AAVQELARLAGGAPGGLPLLDPVGTLQLRDPEAVEAATRARTLAASLGSFQCVHSPRFPQ
QYAQFAARQELLEQLEHLQFLLSDQSLLLLPEYHQRVAVLRALGYVVEGGAVALGGRLAS
LLSTHELVLTELLLGNVLAPLRPEESVALLSCMVCQGRGDAPPHVPPALHQGMEQVRAVA
QRVGQLQQDCGLSQSVEEFVDQFSFSLVEVVYEWARGMPFADIARLAAVQEGAVVRCIQQ
LEEMCREVRQAARLVGESALAAKMEAASNMIKRDIVFAASLYTQ
NT seq
3735 nt
NT seq
+upstream
nt +downstream
nt
atggagctggagcggatcgcgctgcccccccgcgggcccctggagctgccgctggcgctg
ctggagctgggctgcgccggccgcttcgagctgctgacgggacccccggggccgggggaa
gcccccccgccgcggtccacactgccccaggggctgccccccttcgccctccccccggtg
tcggagctggagcagcggtttttggggacccccgagtggctgcccccccaccagcatgag
cgggcccgcaggtgctggcagcgggcaccggagccccgggccctctttgcgctggagccc
accccggtggccggggggctgcgggccgagcgggacccccacagcggcaccctgaggggc
ttcactgaggagctgctgtctgacgtgggactctcagccaagaattcgctgtcgctgcgc
cggccccccggcccccccgggcaaagcctgcggggcaatgccaccaacttccctttctgg
ccagggggtctggatgagcccagcctggagcagatccgcacccatggggatgaggaggaa
gatgtcgattttgagactgacctgctggtgaccccccctgggctgaaacgtggcgttgac
tacaaacccccagcggcgagggtgggggggccgctgtccctctccagcctcttggagacc
ctcgacacgttcgacctggggggggatgaggccgaggggggctcaggggacacccagccc
ccagtggggggcagccccccaccccccctgcgccatgccgacagcctggaggaggtgctg
ctgaaggaggcggtggagccccccgccccccccccggagccccccgaggagcagtgggcc
atccccattgacgccagcacccccgtggaggactttgacaagcgcatccctgaccccgct
ttcaagtggcccttcgtgcccgaccccttccagcagcaggcggtgctgtgcctggagcag
ggccactcgctgctggtggccgcccacacctcggccggcaaaaccgccgtggccgagtac
gccatcgccctggcccagcgccacatgacccggaccatctacacctcccccatcaaggca
ctctccaaccagaagttccgggatttcaagacgacgttcggggacgtggggctgctgacg
ggggacgtgcagctgcgccccgaggcctcctgcctcatcatgaccaccgagatcctgcga
tcgatgctctacaacggctccgacgtcatccgggagctggagtgggtcattttcgatgag
gtgcattacatcaacgatgctgagcgcggtgtggtgtgggaggaggtgctgatcatgctg
cccgagcacgtcaagctcatcttgctcagtgccaccatccccaacgccctcgagttcgcc
cagtgggtcggccgcaccaagcgccggcgcctgcgggtgatcagcacgcggcagcgcccg
gtgccgctggagcattttctctacaccgggaacagcagccgcacccgccaacagctcttc
ctcctcctcgacgcccgcggcaacttcagcacccaggggtactacgcggccgtggaggcc
aagaaggaacgaaccagcaaacacgcgcagaccttcggagccaagcagcccaccatgggg
ggctccggtcccgggcaggaccggggggtctggctggcgttgctggggctgctgcgggag
cgggagcagttgccggtcgttgccttcaccttctcccgcagccggtgcgacgagcacgcc
gacacgctgggctcccttgacctggtctccagcgccgagaagggccggatccggctcttc
ttccagcgctgcatcgcccgcctgcgcggctccgaccgccagctgccgcaggtgctgcgc
atggcggagctgctgcagcgcggcatcggggtgcaccacggcggggtgctgcccctgctc
aaggaggtggtggagatgctcttcagccaggggctggtcaaggtgctcttcgccaccgag
accttcgccatgggggtgaacatgccggcccgcaccgtcgtgtttgactccatccgcaaa
cacgacggcaacaatttccgtgatctcctgcctggggagtacgtgcagatgtcggggcgc
gcggggcggcgggggttggattccaccggcaccgtcatcatcctctgcaaggggcccgtg
cccgagatggccgacctgcaccgcgtgatgctgggccgcccgacgcgcctgcagtcccag
ttccgcctgacctactccatgatcctcaacctgctgcgggcgcaggcgctgcgcgtcgag
gacatgatgcggcgaagcttctccgagttccccctgcggcgcgacgccccggcgcaggag
cggcgcgtggcggagctgcagcgggagctggcggcgctgggggagccggaggccgagggg
gccatggccgacctgcccccctaccaccgcgccgtgcaggggctgcgccaggcccgcgcc
ctcctccagcggcgcctgacagagtcggtggcggggctgcgggcgctggcgcccggccgg
gtggtggtggtctgcacccccaaacaccgcaatgccctcggcctcatcctccaggtgtcc
tcagaggggtccggccgcaccttcaccacactggtgctgtgcgagaagccccctgaggag
ggggggccggcggtggagccccccaaagtccccgatgtcccctaccctgaggacctgctg
ttcaccaggctcttcgtgcctgagggcgcctgcggccatgtgctggagaagctgcagccc
ggggacatcgggggggtcacggccaagaccctgcgggtgaaccccgagagggtcctccag
gagctgcgcccccgccagggcccccgccccagatcagagccccccgggatggaggtgggg
gcggcggtgcaggagctggcccggctggcggggggggccccgggggggctccccctgctc
gacccggtggggaccctgcagctgcgggaccccgaggccgtggaggcggctacccgtgcc
cggaccctggccgcctcgctgggctccttccagtgcgtccacagcccccgcttcccccag
cagtacgcccagttcgccgcccgccaggagctgctggagcagctggagcatctccagttc
ctgctgtcggaccagtcgctgctgctgctgcccgagtaccaccagcgtgtggccgtgctg
cgggcgctggggtacgtggtggaggggggggcggtggcgctggggggtcgcctggcgtcc
ctgctgagcacccacgagctggtgctgaccgagctgctgctggggaacgtcctggccccc
ctgcgccccgaggagagcgtcgccctgctctcctgcatggtctgccaggggcggggggac
gcccccccccatgtgccccctgccctccatcaggggatggagcaggtgcgggcggtggcg
cagcgcgtggggcagctgcagcaggactgcggcctcagccagagcgtcgaggagtttgtc
gaccagttcagcttcagcctcgtcgaggtcgtctacgagtgggcccgtggcatgcccttc
gcggacatcgcccggctggcggcggtgcaggagggggccgtcgttcgctgcatccagcag
ctggaggagatgtgccgggaggttcgccaggccgcccggctggtgggggagtccgcgctg
gccgccaagatggaggccgcctccaacatgatcaagcgcgacatcgtctttgccgccagc
ctctacacccaataa
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