Buteo buteo (common buzzard): 142027072
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Entry
142027072 CDS
T11399
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
bbut Buteo buteo (common buzzard)
Pathway
bbut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
142027072 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbut03019
]
142027072 (MTREX)
03041 Spliceosome [BR:
bbut03041
]
142027072 (MTREX)
03009 Ribosome biogenesis [BR:
bbut03009
]
142027072 (MTREX)
03016 Transfer RNA biogenesis [BR:
bbut03016
]
142027072 (MTREX)
Enzymes [BR:
bbut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
142027072 (MTREX)
Messenger RNA biogenesis [BR:
bbut03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
142027072 (MTREX)
Spliceosome [BR:
bbut03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
142027072 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
142027072 (MTREX)
Ribosome biogenesis [BR:
bbut03009
]
Eukaryotic type
Pre-60S particles
Helicases
142027072 (MTREX)
Transfer RNA biogenesis [BR:
bbut03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
142027072 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
142027072
NCBI-ProteinID:
XP_074876797
LinkDB
All DBs
Position
Z:19850868..19901366
Genome browser
AA seq
1035 aa
AA seq
DB search
MADAFGDELFSVFEEDSAAAAASGAKKSKAGATEGARRPGRQLEEKSSVAVAGKPKREIE
VDGTEDAVLGKKPKLEDVVSEDANLADLMPQVKVQAVETVEGCTHEVALPADEVFTGLKP
RTGKAAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALRDKQRVIF
TSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVA
WVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVI
YTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGG
TKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNA
IDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAM
GINMPARTVLFTSASKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTI
GKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRTIPEIVERVSN
LEGQYNKIAIPNEENVVIYYKIRQQLAKLGKEIEEYVHKPKYCLPFLQPGRLVKVKNEGD
DFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLHCSKESLKNSATEAAKPARPDEKGEMQ
VVPVLVHLLSAISSVRLYIPKDLRPIDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIKD
QGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYKLCEKKAQIAMDIKAAKRELKKARTVLQ
MDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATA
LLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEENYLNSFRPNLM
DVVYTWANGANFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGI
TKIKRDIVFAASLYL
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcgttcggggacgagctcttcagcgtgtttgaggaggactcggccgccgct
gccgcctccggcgccaagaagagcaaagcgggcgccaccgaaggcgccaggagaccggga
agacaactggaggaaaagtcttcagtagctgtggcagggaagcccaaaagggaaatcgag
gtcgatggtactgaagatgctgttttgggaaagaagccaaaattggaagacgttgtatca
gaagatgctaatctggcagacctgatgcctcaagtaaaggtgcaagctgtggaaactgtt
gaaggttgtacacatgaggttgcacttccagcagatgaagtcttcacaggtctgaagcca
agaactggaaaagctgcaaaagaatatccatttattcttgatgcctttcagagagaagct
attctttgtgtagataataaccagtctgtgttagtgtcagctcatacatcagctggtaaa
actgtttgtgcagagtatgcaattgctttggctttgagggataaacagcgtgtgatattt
acaagtccaattaaagctttgagtaatcagaagtaccgtgaaatgtatgaagaatttcag
gatgttggtttgatgactggggatgtcaccattaatcctacagcttcttgtctggtaatg
acaactgagattttgagaagtatgctctacagaggttctgaggttatgcgagaagtcgca
tgggttatttttgatgaaatccactacatgagagattcagaacgtggtgtggtttgggaa
gagacaattattttgctccctgacaatgttcattatgtgttcctttctgcaactattcca
aatgcccgccagtttgctgaatggatctgccatcttcacaaacagccttgccatgtgatt
tacaccgactatcgacccactccactgcagcattatatattcccagcaggaggagatgga
ctccatctggttgttgatgaaaatggagatttcagagaagataattttaatacagcaatg
caggtgcttagagatgcaggagacttagcaaaaggggaccagaaaggcaggaaaggagga
acgaaaggtccttcaaatgtttttaagattgtgaagatgatcatggaaaggaatttccaa
cctgtgattattttcagcttcagtaagaaagactgcgaagcctatgcacttcagatgacc
aagttagatttcaatacagatgaagaaaaaaagatggtagaagaagtgttcaataatgca
attgattgtctgtcggatgaagacaaaaagcttcctcaggttgagcatgtgcttcctctt
ctgaagcgaggaattggtatccatcatggtggtctacttcctatcttaaaagaaaccata
gaaattcttttctctgagggcctaataaaggctttatttgcaacggagacttttgctatg
ggaattaatatgccagccaggactgtactatttacgagtgccagcaaatttgatggaaaa
gatttccgatggatatcctcaggtgaatacattcaaatgtcaggtcgtgcaggacgccga
ggtatggatgacagaggaatagtaattcttatggtggatgaaaaaatgagtccaacaatt
ggcaagcagcttttgaagggttcagctgatcctttaaacagtgcattccacctgacatac
aacatggtattgaacttgcttcgagtagaggaaattaaccctgaatacatgttagaaaaa
tccttctatcagttccagcattacagaactattccagaaatagtagaaagagtgagtaat
ttggaaggacagtacaacaaaatagcaattcccaatgaagaaaatgtggtcatatactac
aaaatccgacagcagcttgcaaaactgggtaaagagattgaagaatatgttcacaaacca
aagtattgcttgccatttctacagccaggaagactggtaaaggtgaagaacgaaggtgat
gactttggatggggagtggttgttaatttctctaagaaatcaaatgttaagccaaattct
ggtgaattggacccattatatgtagttgaagtgctactgcactgcagcaaagagagtttg
aaaaattctgctactgaggctgcaaagccagccagacctgatgagaaaggcgagatgcag
gttgttcctgttttggtacatctcctctcagctatcagcagtgtccgactttacataccg
aaagacctgaggcctattgacaacaggcaaagtgtgttaaaatctatacaggaagtacag
aaacgatttcctgatggagtaccattactagaccctattgatgacatgggcatcaaagat
caaggactgaaaaaagtaatccaaaaagtagaggcatttgagcataggatgtattcacat
cctcttcacaatgatcccaacttggaaactgtatacaaactttgtgaaaaaaaagcacag
attgctatggatattaaagcagcaaagcgagaactgaaaaaagccagaactgtcttacaa
atggatgaactcaaatgccgcaagcgtgttttgagaagactggggtttgccacgtcttca
gatgttattgagatgaaaggacgggtcgcttgtgaaatcagcagtgctgatgaactactc
ttgacagaaatgatgttcaatggtctcttcaatgacttatctgcagaacaggcaactgca
ctactaagctgtttcgtatttcaagagaactccagtgaaatgccaaaattgacagagcag
ttggcaggaccacttcggcaaatgcaggagtgtgcaaaaagaattgccaaggtgtcagca
gaggcaaaactggaaattgatgaagaaaattacttaaattctttcagacccaacctgatg
gatgttgtgtatacatgggcaaatggagctaactttgctcacatctgcaaaatgactgat
gtctttgaagggagcataattcggtgcatgagaaggctggaagaattgcttcggcagatg
tgccaggctgcaaaagccattggaaacacagagttggaaaataagtttgcagaaggtatt
acaaaaatcaagagagatattgtgtttgctgcaagcctttacctgtaa
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