Buteo buteo (common buzzard): 142029972
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Entry
142029972 CDS
T11399
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
bbut Buteo buteo (common buzzard)
Pathway
bbut03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bbut00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142029972 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbut03019
]
142029972 (XAB2)
03041 Spliceosome [BR:
bbut03041
]
142029972 (XAB2)
Messenger RNA biogenesis [BR:
bbut03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
142029972 (XAB2)
Spliceosome [BR:
bbut03041
]
Complex B
Other components
Prp19-related factors
142029972 (XAB2)
Complex C
142029972 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
TPR_12
TPR_2
TPR_8
TPR_19
Suf
TPR_15
TPR_7
ARM_TT21_C
TPR_16
ARM_TT21
PPR
TPR_1
Motif
Other DBs
NCBI-GeneID:
142029972
NCBI-ProteinID:
XP_074881377
LinkDB
All DBs
Position
4:complement(27136863..27149605)
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AA seq
853 aa
AA seq
DB search
MAEREKMADVVEMPEREELHFEEEDVQHEEEILRNPFSVRCWLRYAQARQKGPRHRLNLL
FERALRELPGSYKLWYQYLRQRRQQVKGRCPTDPAYEEANGCHERALVFMHKMPRIWLDY
CQFLVDQGRITRTRRTFDRALRALPITQHHRIWPLYLQFVRRYPLPETAVRVYRRYLKLS
PESAEEYVEYLRSVGRLDEAAVRLARLVNDERFVSKEGKSNYQLWQELCELLSQHPERVR
SLDAGAIIRGGLTRFTDQLGRLWGALADCYIRSGHFEKARDVYEEAVQTVMTVRDFTQVF
DSYAQFEESVIAAKMETVAELGKEEDEEVELELRLARFEQLMARRPLLLNSVLLRQNPHN
VHEWHKRVQLYQGRPEQIINTYTEAVRTVDPFKATGRPHGLWVAFARFYEDNGQLDDART
ILTKATRVRFRQVEDLAAVWCEFGEMELRHENYDEALRILRKATALPAKRAEYFDSTEPV
QNRLYKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYGLFLEEHGYFEE
SFKAYERGIALFRWPNVADIWHTYLSKFVARYGGRKLERARDLFEQALDGCPPKYAKTIY
LLYAKLEEEFGLARHAMGVYERATRAVLPAQQHDMFNIYIKRAAELYGVTHTRPIYQKAI
EVLGDDAARELCLRFADMECKLGEVDRARAIYTYCSQICDPRITGTFWQTWKDFEIRHGN
EDTIREMLRIKRSVQATYNTQVNFMASQMLKVYSNATGTVSDLAPGQSGLDDMKLLEQRA
EQLAAEARRDTPRPPEKVLFVRAEGPREALAALSQQGNPDEIDLGDEDEPEPDEVQLEQK
RVPSSVFGGLKDD
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atggcggagcgggagaagatggcggacgtggtggagatgccggagcgggaggagctgcac
ttcgaggaggaggacgtgcagcacgaggaggagatcctgcgcaaccccttctcggtgcgg
tgctggctgcgctacgcccaggcccggcagaaggggccgcgccaccgcctcaacctcctc
ttcgagcgcgccctcagggagctgcctggcagctacaagctgtggtaccagtacctgcga
cagcggcggcagcaggtgaagggacgctgccccaccgaccctgcctacgaggaggccaac
ggctgccacgagcgcgccctcgtcttcatgcacaagatgccccgcatctggctggattac
tgccagttcctggtggatcagggccggatcacgcggacacgccgtaccttcgaccgggcc
ttgcgggcgctgcccatcactcagcaccaccgcatctggcccctctacctccagttcgtc
cggcgctaccccctgcccgagactgccgtccgcgtctaccgccgttacctgaagctgagc
cccgagagcgcggaggagtacgtggagtacctgcgctccgtggggcgcctggacgaggcc
gccgtgcgcctggctcgcctcgttaacgacgagcgcttcgtctccaaggagggcaagtct
aattaccagctgtggcaggagctgtgcgagctgctctcccagcacccggagcgggtgcgc
tcgctggacgcgggtgccatcatccgggggggactgacccgcttcaccgaccagctgggc
cggctctggggagccctggccgactgctacatccgcagcggccacttcgagaaggcccgg
gatgtctacgaggaggcggtgcagacggtgatgacggtgcgggacttcacccaggtcttc
gacagctacgcccagttcgaggagagcgtcattgccgccaagatggagacggttgcggag
ctgggcaaggaggaggacgaggaggtggagctggagctgcggctggcccgcttcgagcag
ctgatggcccggcgcccgctgctgctcaacagcgtcctgctgcgccagaacccccacaac
gtccacgagtggcacaagcgggtgcagctctaccagggacgtcccgagcagatcatcaac
acctacacggaggctgtccgcaccgtggaccccttcaaggcgacggggcgcccgcacggg
ctgtgggtggccttcgcccgcttctatgaggacaacgggcagctggatgatgctcgcacc
atcctgaccaaggccacccgcgtccgcttccggcaggtggaggacctggccgccgtctgg
tgcgaatttggggagatggagctgcgccacgagaactacgacgaggccctgcgtatcctg
aggaaagccacggcgctgcctgccaagagggccgagtactttgactccacggagcccgtc
cagaaccgcctctacaagtccctcaaggtctggtccatgttggccgacctggaggagagc
ctgggcaccttccagtctaccaaggcagtatacgaccgtatcctggacctgcgcatcgcc
accccccagatcgtcatcaactacggcctcttcctggaggagcacggctacttcgaggag
agcttcaaggcctacgagcgaggcattgcgctcttccgctggcccaacgtggcggacatc
tggcacacctacctcagcaagttcgtcgcccgttacggcgggcgcaagctggagcgagcg
cgggacctcttcgagcaggcgctggatggatgtccccccaaatacgccaagaccatctac
ctgctgtacgccaaactggaggaggagttcgggctggcgcggcacgccatgggggtgtac
gagcgtgccacccgtgccgtcctgcccgcccagcagcacgacatgttcaacatctacatc
aaacgggcggccgagctctacggcgtcacccacacccgtcccatctaccaaaaagccatc
gaggtgctgggtgacgacgcggcgcgggagctctgcctgcgcttcgccgacatggagtgc
aagctgggggaggtggatcgtgcccgcgccatctacacctactgctcccagatctgcgac
ccccgcatcacgggcaccttctggcagacctggaaggatttcgagatccgtcacggcaac
gaggacacgatccgggagatgctgcgcatcaagcgcagcgtccaggccacctacaacacc
caggtcaacttcatggcctcccagatgctcaaggtctacagcaacgccacgggcaccgtg
tccgacctggccccgggacagagcggcctggacgacatgaagctgctggagcagcgagcg
gagcagctggcggccgaagcacggcgggacaccccccgcccccccgagaaggttctcttc
gtcagggctgagggcccgcgggaggctctggccgccctgtcccagcaggggaatcccgac
gagatcgacctgggggacgaggacgagcccgagcctgacgaggtgcagctggagcagaag
cgggtgccctcctccgtcttcgggggcctcaaggacgactga
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