Buteo buteo (common buzzard): 142031505
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Entry
142031505 CDS
T11399
Symbol
PRPF40A
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
bbut Buteo buteo (common buzzard)
Pathway
bbut03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bbut00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142031505 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bbut03041
]
142031505 (PRPF40A)
Spliceosome [BR:
bbut03041
]
Complex A
U1 snRNP components
U1 related factors
142031505 (PRPF40A)
Complex B
142031505 (PRPF40A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
FF_PRPF40A
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
142031505
NCBI-ProteinID:
XP_074885186
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All DBs
Position
5:complement(52773707..52799111)
Genome browser
AA seq
1027 aa
AA seq
DB search
MSGGDSAAAAAATASPQPLPFSLPKPPPLMQLTPGDAVRPVASAADQSPKSTRLAGRPDW
PAGKPVSLLAPLLPPRGEPEPLMPFGPSSRQPLRGRLLGRCSGGSLLSPSMRPGGVDRGS
LMMGHPGMPHYPPMGMHPMGQRPPNMPPVPHGMMPQMMPPMGGPPMGQMPGMMQSVMPGM
MMSHMSQAAMQPTVPPGVNSMDAQVGVTPPGTQSSVLFRPQTTHPVVCAAQQTATTNSSV
NEEHSKQKSTWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSG
KPYYYNSQTKESRWAKPKELEDLEAMIKAEENSTKPEESTPTPSASAAAAEAANATTTAT
TAAEAAAAVSTTTATSAATAAPEAETAAASSVVENESTGTAAAEEQGQATSAPAVQEQSA
ETAANAADDSSKQEASADAASKKEDDDAQPVKKTYTWNTKEEAKQAFKELLKEKRVPSNA
SWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLEN
HEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWEA
LKNILDNMANVTYCTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEE
EEKQKSLLRERRRQRKNRESFQLFLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQP
VFSSGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTSFEDFVTVISSTKRA
TTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQATPPIELDAVWED
IRDRFVKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSKNKKHSKKSKKHHRKRSRSR
SGSESEDDDSHSKKKRQRSESRSVSERSSSAESERSYKKSKKHKKKSKKRRHKSDSPESD
IEREKDKKERESEKDRARQRSESKHKSPTKKRPGKDSGNWDTSGSELSEGELEKQRRTLL
EQLDEDQ
NT seq
3084 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggtggggactcggcggcggcggcggcggcgaccgcctccccgcagccgctcccg
ttctccttgccgaagccccctcccctcatgcagctgacgccgggggacgccgtccgcccc
gtcgcttccgccgcggaccaatcgccgaagagcacccggctggcgggccgcccggattgg
ccggccggcaagccagtcagcctgctggccccgctgctcccgccccgcggggagcccgaa
ccgctgatgccctttggcccctcgtcgcggcagccactcagagggcggcttcttggcagg
tgcagcggcggcagcctgctgagcccctcgatgcggcccggcggcgtcgaccgcggctcc
ctcatgatgggacacccaggcatgccacattatcctcccatgggaatgcaccctatgggt
cagagaccaccaaatatgccgccagttccacacggtatgatgcctcagatgatgcccccc
atgggaggaccaccaatggggcagatgcctggaatgatgcagtcagtaatgcctggaatg
atgatgtctcacatgtctcaagctgctatgcagcctacagttccgccaggggtgaacagt
atggatgcacaagtaggtgtaacacctcctggaactcagagctctgttttgtttcgccct
cagacaacacatcctgtagtttgcgcagcccagcaaaccgccacaaccaacagttctgtt
aatgaagagcactctaaacagaaatctacatggacagaacacaaatcacctgatggaaga
acatattactataatactgaaacaaagcagtctacgtgggagaagccagatgatcttaaa
acacctgctgagcaattgttgtctaaatgtccctggaaagagtataaatctgattccgga
aagccctactattataattcccaaacaaaggaatcacgctgggcaaaacccaaagagctt
gaggatcttgaagcaatgattaaagctgaagagaacagcacaaagcccgaagaatcgact
ccaacgccatctgcttcagctgctgcagcagaagcagcaaacgcaaccaccacagccaca
actgctgctgaagctgccgcagctgttagtaccaccactgctacttctgcagcaacagca
gcccctgaagcagaaactgctgcagcttcttctgtggtagaaaatgagagtactggcaca
gccgcagctgaggaacagggacaagcaacttctgcacctgctgtgcaggaacagagtgca
gaaactgcagctaacgcagcagacgactcttccaagcaggaggcctcagcagatgctgct
tcaaagaaagaggacgacgatgcccaaccagttaaaaaaacgtatacatggaatacaaag
gaagaagcaaagcaagcgtttaaagaactgttaaaagaaaagcgagtaccatccaatgcc
tcttgggagcaagctatgaaaatgatcattaatgatcccagatatagtgctttggcaaaa
ttaagtgaaaaaaagcaagcctttaatgcttacaaagttcaaacagaaaaagaagagaaa
gaagaagcaagatcaaaatacaaagaagctaaagaatccttccagcgttttcttgaaaac
catgagaagatgacatccacaacaagatacaaaaaagctgaacaaatgtttggggagatg
gaagtctggaatgcgatatctgagcgtgatcgtcttgaaatttatgaagatgtcttgttt
tttctctctaagaaagagaaggaacaagccaaacagttaagaaaaaggaattgggaagct
ttgaagaacatactagataacatggctaatgtcacttactgtactacttggtcagaggct
cagcagtatctgatggataatcctacatttgcagaagatgaggaacttcagaacatggat
aaggaggatgcactgatctgttttgaggaacatatcagggcattggaaaaggaggaggaa
gaagaaaaacagaaaagtttgcttagagaaagaaggcgacagcgcaaaaatagagaatct
tttcagctatttttagatgaactgcatgagcatggacaattacattccatgtcctcttgg
atggagttgtacccaaccataagctctgacatcagatttacaaatatgcttggtcaacct
gttttttcatcaggatcgacagcacttgatcttttcaagttctatgttgaagacttgaaa
gcacgttaccatgatgaaaagaagataataaaagatatcttaaaggataaaggatttgtg
gttgaagtgaatacttcttttgaagattttgttacggtcatcagttcaactaaaagagct
actactttagatgcaggaaatatcaagctggctttcaacagtctgctagaaaaggcagaa
gcccgtgaaagagagagggaaaaagaagaagctcgcaaaatgaagcggaaagagtctgcc
ttcaagagtatgttgaagcaagctactcctccaattgaattggacgctgtctgggaagat
atcagagatagatttgtgaaagaaccagcatttgaagacatcactctggagtctgaaaga
aaaagaatatttaaagatttcatgcatgtactagagcacgagtgtcagcatcatcattca
aagaacaagaagcattctaaaaagtctaaaaaacatcacaggaagcgatcacgttcccgt
tcgggctcagaatctgaggatgatgatagccactcaaagaagaaaaggcagcgttcagaa
tctagatcagtttctgagcgttcttccagtgcagagtcggagagaagttacaagaagtca
aaaaaacacaagaaaaagagcaagaagagacgacataagtctgattcaccagaatcggat
atcgaacgagaaaaagacaaaaaagaaagagagagcgagaaggatagagctagacaaaga
tctgaatcaaaacataaatctcctactaaaaaacgacctggaaaagattctgggaactgg
gatacttcgggcagcgaactgagcgaaggggagctggaaaaacagaggaggacgcttttg
gaacaactggatgaagatcaatga
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