Buteo buteo (common buzzard): 142034649
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Entry
142034649 CDS
T11399
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
bbut
Buteo buteo (common buzzard)
Pathway
bbut03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bbut00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142034649 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bbut03041
]
142034649 (DDX42)
Enzymes [BR:
bbut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
142034649 (DDX42)
Spliceosome [BR:
bbut03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
142034649 (DDX42)
Complex B
142034649 (DDX42)
Complex C
U2 SnRNP specific factors
142034649 (DDX42)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
DUF460
Motif
Other DBs
NCBI-GeneID:
142034649
NCBI-ProteinID:
XP_074892357
LinkDB
All DBs
Position
9:42984910..43003658
Genome browser
AA seq
950 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAITPGKKEEPKLSQQSHSAFGTAGSSAAFAKSGPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVELPYIPAENSPTRQQFHSKSADSDSDDDPLEAFM
AEVEDQAARDMKRLEDKDKEKKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIEYPPFEKNFYDEHEEITSLTPQQVVELRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKV
ISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENSDRGNNNSVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLNNQ
KTGSSAAGASGWTSAGSLNSVPTSSAQQNAANPDSPIAATAAAKGVPGFTSTGNLSSVPT
FPSVGVQGFNNTNASTNNREGSSSTGVATAGSGGGGSSSGGGGGGGGGGIVRERYNDNRN
SRHNEIPRRGEGGGRYNDVQRHGEGGGRHSDVYRHGEGRHGDNHRHGESRHFTDVSSGNR
NNGDSRNSNEGRNNENRNGDNRKDANSRDNKTDGFAVPEPPKRKRSRWDS
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atgaattggaataaaggtggacctggtactaagagaggctttggttttggtggatttgcc
ataacacctggaaaaaaagaggagcctaagctctctcaacagtctcatagtgcttttgga
acagccggttcttctgctgcatttgcgaaatcgggacctcctcagctgccttctttctac
aaaattgggtcaaagcgagcaaattttgatgaagagaatgcgtactttgaggatgaagag
gaagattccagcaatgtcgagttgccatacattcccgcagaaaattcccccactcgccag
cagtttcattccaaatcagcagactctgacagcgatgatgatcctctggaggcattcatg
gctgaagtggaggatcaagctgctcgagacatgaagagacttgaagataaagacaaagaa
aaaaagaacgttaagggtattcgagatgacattgaagaggaagatgaccaagaagcttac
tttcgctacatggctgaaaaccccactgctggtgtggtccaagaagaggaagaggataac
ctggagtatgatagtgatgggaatccaattgcaccgtccaaaaaaatcattgatcctctt
ccacctatagaccattcagagattgaatatcctccatttgagaaaaatttctatgatgag
catgaggagatcaccagtctcaccccgcagcaagtggtggagttacgtcataagctgaat
ctccgggtctctggtgctgctcctccaaggcctggcagtagttttgctcattttgggttt
gatgagcaacttatgcatcaaatcaggaaatctgagtatacccagcccactcctatacag
tgtcagggtgttccggttgcactaagtggcagagatatgattgggatagctaagactgga
agtggaaaaacagcagccttcatctggccaatgttgattcacatcatggatcaaaaggag
cttgaaccgggggatggtcccattgcagtgatcgtctgtccgaccagagagctttgccaa
cagatccattctgaatgtaagcgctttggtaaggcatataatctgcgctcagtagctgtg
tatggaggaggaagcatgtgggagcaagccaaagccctccaggagggggcagagatagtt
gtctgcacaccaggtcgcttgattgatcatgtgaaaaagaaagctacaaaccttcaaaga
gtcacttaccttgtgtttgatgaagctgacagaatgtttgatatgggttttgaatatcag
gtcagatcaatcgcaagccacgtacgtcctgacagacagaccctcttgttcagtgccact
ttccgtaagaagattgagaaattggctcgagatattctgatcgacccaattcgagttgtg
cagggagacattggagaggcaaatgaagatgttactcaaattgtggagattttcccctct
ggccctagcaaatggaactggctgactcgacgccttgtggagttcacatcttctgggagc
gttctcctgtttgtcaccaagaaggcaaatgcagaagagctggccaataacctcaagcag
gaggatcataatctggggctgcttcatggtgacatggaccagagtgagaggaataaagta
atttcagaatttaagaaaaaggggatcccaatactggtagctactgatgtggcagctcgt
gggttagatattccttccattaagactgtcatcaattatgatgtggctcgggacatagat
acgcacacccatagaattggtcgtactggcagagcaggcgagaagggagttgcctacact
ctgctgactcccaaagacagtaacttcgctggtgatcttgtcagaaatctggaaggtgct
aatcaacatgtttccaaagagctgttggatctagcaatgcagaatccgtggttccggaaa
tcacgtttcaaaggaggaaaaggcaagaagctgaacattggtggtggtggcttaggatac
cgtgaacgtcctggtctgggatcagaaaattctgaccgtggaaacaacaacagcgtgatg
agtaactatgaggcatacaagccatccactggggcaatgggagacagacttacagcaatg
aaagcagcttttcagtcccagtataagagccactttgttgctgcgagcttaaataatcaa
aagactggtagctctgctgctggtgctagtggctggaccagcgctgggagcttgaactca
gtaccgacaagttcagcacagcaaaatgctgcaaatcctgacagcccaattgcagccacc
gcagcagcaaagggtgttccaggtttcaccagcacagggaatttgagtagcgttcccacc
tttccaagtgtcggagtacagggcttcaacaacacaaatgccagcaccaacaatcgagaa
ggcagcagcagcaccggtgttgccactgctggcagcggtggtggcggcagcagcagcgga
ggtggtggtggcggtggtggtggcggcattgtcagagaacgatacaacgacaaccggaac
agtcgccacaatgagatcccacgccgtggagagggtggtggtcgctacaatgatgtgcaa
cgccatggagaaggaggtggtcgccacagtgacgtttaccgccacggagagggccgacat
ggcgacaaccatcgccacggtgaaagccggcacttcactgatgtgagcagtggcaatcgc
aataacggtgatagcaggaatagcaacgaaggtaggaacaacgagaacaggaatggtgac
aacaggaaggatgccaacagccgagacaacaagacagatggttttgctgtcccagagccc
ccaaaacgtaagaggagccggtgggacagttaa
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