Buteo buteo (common buzzard): 142035638
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Entry
142035638 CDS
T11399
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
bbut Buteo buteo (common buzzard)
Pathway
bbut03013
Nucleocytoplasmic transport
bbut03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bbut00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
142035638 (UPF1)
03015 mRNA surveillance pathway
142035638 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbut03019
]
142035638 (UPF1)
Enzymes [BR:
bbut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
142035638 (UPF1)
5.6.2.5 RNA 5'-3' helicase
142035638 (UPF1)
Messenger RNA biogenesis [BR:
bbut03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
142035638 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
142035638 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
NAT10_TcmA_helicase
DEAD
UvrD-helicase
SRP54
AAA_16
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
142035638
NCBI-ProteinID:
XP_074893986
LinkDB
All DBs
Position
10:complement(1885693..1910186)
Genome browser
AA seq
1120 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGPGQAGPGQGQG
PPGAGQGPPGPIEAQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVH
ACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVL
ECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSW
LVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQ
YQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDE
ICLRYKGDLAPLWKGIGHVIKVPDSSTDYGDEIAIELRSSVGAPVEVTHNFQVDFVWKST
SFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYA
VKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTG
LKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRAL
KRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLI
LVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYE
GSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITT
KLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFII
LSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVL
VEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNM
YFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRG
GRQKNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELS
QDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccccagttcgcagaccctcaccttcctggatacggaggag
gccgagctgctcggcgccgacacgcaaggatccgaattcgagtttaccgacttcactctt
cccagccaaacccaaaccccgcccgggcccgggcaggcgggcccgggacagggccaaggc
ccccccggagcgggtcagggaccgccgggaccgatcgaagcacaggttaatggacctgat
ggcattctacagaatggagctgtggatgataatgtggctaaaaccagccagcttctggca
gaattgaattttgaagaagatgaagaagatacgtattacacaaaggatcttcctgtgcat
gcttgcagttactgtggtatccatgaccctgcttgtgtggtttactgtaacaccagcaaa
aagtggttctgtaacgggcgtggaaatacatctggcagccacattgttaatcatcttgtg
agagcaaagtgcaaagaggtgactctccataaagatggacctctaggagagactgtcttg
gaatgttataactgtggatgtcgtaatgtgtttctccttggctttattccagctaaggca
gactctgtggttgttttgctgtgcaggcagccatgtgccagtcagagcagtttaaaggat
attaattgggacagttcacagtggcagcctcttatccaagatcgctgtttcctttcatgg
ctggtaaagattccatctgaacaggaacagttgagagcacgtcagattacggctcaacag
attaacaaactggaagaactttggaaggaaaatccatctgcaacccttgaggacttagaa
aagcctggtgttgatgaagaaccacagcatgtcctgcttagatatgaagatgcttatcaa
taccaaaatatatttggtcctctagtcaagcttgaggcagactatgacaagaaactcaag
gagtctcagacccaagataacatcacagtcagatgggacctgggcttgaacaagaaaaga
attgcttatttcactttgccaaagactgattcagatatgcgtcttatgcaaggagatgag
atctgcttgaggtataaaggagacctggcccctttatggaaaggaattggtcatgttatc
aaagttcctgatagttctacagattatggtgatgagatagccattgaactgaggagcagc
gttggagcgcctgtggaagttactcataacttccaagtagattttgtatggaagtctact
tcatttgacagaatgcagagtgctttaaaaacatttgctgtggatgagacttcagtgtct
gggtacatctatcacaaactgttaggtcatgaggtagaagacgtaattattaaatgccag
ttgccaaagcgctttacagcacaaggacttcctgatctcaaccattctcaggtttatgct
gtgaagactgtcctgcagcgtcctctgagccttattcagggtccccctggtaccggaaaa
acagtgacatcagccacaatcgtctatcatctggctagacagggcaatgggcctgtgtta
gtctgtgctccgagtaatatagctgtagatcagttgactgagaagatccatcaaactgga
ctgaaagtggttcgtctgtgtgctaaaagtcgtgaggcaattgactctcctgtatccttc
ttggcattgcataaccagatcagaaacatggatagcatgccagagcttcagaagctgcag
cagcttaaagatgaaactggagaactgtcatctgctgatgagaaacgttaccgtgcactg
aaacgaacagcagagcgtgaattacttatgaatgcagatgtgatctgttgcacgtgtgtg
ggagctggtgatccaagacttgcaaaaatgcagttccgctccattctgattgatgaaagc
acacaggctactgagccagagtgcatggtgccagttgtcctgggagcaaaacagcttatt
cttgtgggtgaccactgccagcttggtcctgttgtgatgtgtaaaaaagctgcaaaggct
ggcctatctcagtctctcttcgagaggcttgtggtgctggggattcgtccgattcgcctg
caagtgcagtatcgcatgcatcctgcacttagtgcttttccatccaatatcttctatgag
ggttcactccagaatggtgttactgcggcggaccgtgtgaaaaaagggtttgatttccag
tggccacagccagataagccgatgtttttctatgttacacaaggacaggaggaaattgcc
agctcaggcacctcttacttaaacaggacggaagctgccaatgtggagaagataactaca
aagctattgaaagctggtgccaaaccagatcagattggcattattactccttatgaaggt
caacgatcctatctggtgcagtacatgcaattcagtggttccttgcatacaaagctctac
caggaagtggaaattgcaagtgtggatgccttccagggccgagagaaggactttattatc
ctttcttgtgtgagggccaatgaacaccaaggaatagggtttctgaatgaccccaggcgt
cttaacgtagctcttacaagagcaaggtatggagtaattattgttgggaacccaaaagca
ctgtctaaacaaccactttggaatcacctgctgaattactacaaggagcagaaggttctg
gtggagggaccactgaataatctccgggaaagccttatgcagtttagcaagccccggaaa
cttgtcaataccatcaacccaggtgcccgtttcatgactactgccatgtatgatgcacgt
gaggctattattccaggatctgtctatgaccggagcagtcaagggcgcccatccaacatg
tacttccaaacccatgaccagatcgggatgattagcgctggccccagccatgtcgctgct
atgaacattcctatccctttcaaccttgtgatgccaccgatgccaccaccgggatacttt
ggccaggctaatggaccagccgcaggacgtggggcgccaaaagggaagactggtcgtggt
gggcgccagaaaaatcgttttgggattcctggaactagtcagtcaaaccttccaaatagt
caagcgagccaagatgtggtgtcccagcctttctcccagggtccactgactcaggggtat
atctccatgagtcagccatcacagatgagtcagcctgggctctcccaaccagaattatca
caggacagttaccttggtgatgagtttaaatctcagattgacgtggcgctgtcacaggac
tctacttaccagggtgaacgtgcatatcaacatggtggagtgacgggactgtcacagtat
tag
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integrated database retrieval system
