Bifidobacterium breve ACS-071-V-Sch8b: HMPREF9228_0144
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Entry
HMPREF9228_0144 CDS
T01844
Symbol
dnaX
Name
(GenBank) DNA polymerase III, subunit gamma and tau
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
bbv
Bifidobacterium breve ACS-071-V-Sch8b
Pathway
bbv03030
DNA replication
bbv03430
Mismatch repair
bbv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bbv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HMPREF9228_0144 (dnaX)
03430 Mismatch repair
HMPREF9228_0144 (dnaX)
03440 Homologous recombination
HMPREF9228_0144 (dnaX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bbv03032
]
HMPREF9228_0144 (dnaX)
03400 DNA repair and recombination proteins [BR:
bbv03400
]
HMPREF9228_0144 (dnaX)
Enzymes [BR:
bbv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HMPREF9228_0144 (dnaX)
DNA replication proteins [BR:
bbv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HMPREF9228_0144 (dnaX)
DNA repair and recombination proteins [BR:
bbv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HMPREF9228_0144 (dnaX)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_delta2
AAA
DNAX_ATPase_lid
DNA_pol3_gamma3
AAA_30
RuvB_N
AAA_22
zf-CXXC
AAA_14
AAA_19
DEAD
AAA_2
Rad17
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AEF27421
LinkDB
All DBs
Position
183223..185955
Genome browser
AA seq
910 aa
AA seq
DB search
MALALYRRYRPDTFEGVIGQDQVTVPLMRALDEGRLTHAYLFSGPRGCGKTSSARILARC
VNCAKGPTSHPCGECESCKDLATGGPGSIDVVEIDAASHNGVDDARELRERAGFAPARDR
YKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRTHHYPFRLVP
QEVMGPYLETICEKESIKPEPGVLKLAMRAGGGSMRDTLSVLDQLMVGSVEGVITHDAAV
ALLGFTPEALIGEAIDAVIDHNGEALYGVIQKVVVGGFDPRRFVEDLLARVRDLLVLTLA
GDRAESVLSDTAEAEDMDDLHRQAKALGLSALTAIADIINTTLGAMTGAISPRMRLELLA
ARLLAGSENGFVAPAAAPALGAPAPATGAVASAAPATGGAAGGFAGASRGGFAGASQGGF
SGASRNRSQSQPQTPANAPAANAGGWNAAGTLNPAGSAGQTGAAGQAAPAQQAMPAAAAP
AAPASPATNAAAPSSDSRSTDEKWNAAVAALPQAIREYVTRDKVPTVAFGPNRKGLPCLS
MTFDKPLSQHAFALAVDNSGKKAAIVVMDAVRQEFGADAVIAPAAVAANGERVESVKRLS
PEQLAKVKQQIAMAKAGLAASSLGAGLGMHSGSEPKAQKPAAEGNAEDADGSHRASGVTP
GGTSNKPDLDDDDPWAKPAASSEAVGEPSASAGEPSVDGFAPSNPDPASAQAPEEHHKKH
VAVPDMSDDVDPWATPAAPVAHAQDATANTQAGQAEQSAASTSSNVGAPAADSAAPTASA
DPWNQPAASAPQAAPDPWNQPAPPQSEPDPWNQPQGQAQRQTPSQSQGIPQSQNSGAADP
WNQSVPPSPQPQVAAEDDEYSMSDQSLGDATAMKMDDLKKLFEVKKVEEFAADDPKNPKN
IQPAKKHTDD
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atggcacttgcactgtatcgtcgctatcgtccggacacctttgaaggtgtgatcggccag
gaccaggtcacggttcctctgatgcgagcccttgacgagggcaggctcacgcatgcctat
ttgttctccggcccgcgaggctgcggcaagaccagttccgcgcgtatcctggcccgttgc
gtcaactgcgccaagggcccaacctcgcatccgtgcggcgagtgtgaaagctgcaaggat
ctggccaccggaggcccgggatccatcgatgtggtcgaaatcgatgccgcctcacacaac
ggtgtggacgatgcccgcgaattgcgcgaacgcgccgggttcgcccccgcccgcgaccgc
tacaagattttcatcctcgacgaggctcacatggtcacgcagcagggcttcaacgcgctg
ctcaagatcgttgaggaaccgcccgagcatgtgatgttcatcttcgctaccaccgaaccg
gacaaggtgattggcaccatccgttcgcgtacccatcattacccgttccgtctggtgccg
caggaggtcatgggcccctatctggaaacgatctgcgagaaagagagcatcaagcctgag
cccggcgtgctgaaactcgcgatgcgtgccggcggcggctccatgcgagacaccctgtcc
gtgttggaccagctcatggtcggttccgtcgagggcgtcatcacccatgatgccgccgtg
gctctgcttggtttcactcctgaagcgttgatcggtgaggccatcgatgcggtcatcgat
cataacggcgaggccctgtacggcgtgatccagaaggtcgtggtcggcgggttcgaccca
cgacgattcgtggaggatctgctggcccgcgtgcgtgacctgctggtgctgactttggcg
ggcgaccgcgcggaatccgtgctgtcagacacggccgaggccgaggacatggacgacctg
caccgccaggccaaggcccttggactgagcgcgctcaccgccattgcggatatcatcaac
accacgctgggtgccatgaccggtgccatctctccgcgtatgcgactcgaattgctggcg
gcccgactgctggccggcagcgaaaacgggttcgttgcacccgctgccgctcccgcattg
ggagctcccgcgccagccacaggagctgtagcctctgccgctcccgctacgggaggtgcg
gcaggaggcttcgctggagcgtctcgcggcggtttcgccggagcctcacagggtggtttc
tccggcgcttcgcgcaaccgatcgcagtcacagccgcagaccccggctaacgctcctgcc
gcaaatgccggtggatggaatgccgctggcacattgaatccagcgggctccgctggccag
acgggtgccgccggtcaagctgcccctgctcagcaggccatgcccgcagccgccgcccct
gctgcgcctgcatctcctgctacgaatgctgcggctccaagctccgactcccgatccact
gatgaaaagtggaatgcagccgttgccgcattgccgcaggccatccgcgaatacgtcacc
agagacaaggtgccgacggtggcattcggccccaaccgtaagggattgccctgcctgtcc
atgaccttcgacaagccactcagccagcatgcgtttgcgctcgcggtggataacagcggc
aaaaaggccgcaatcgtggtgatggatgccgtacgccaggaattcggtgccgatgcggtt
atcgctcctgcggccgttgcggccaacggtgagcgagtggaatccgtcaagcgcctgagc
cccgaacagttggccaaggtcaagcagcagattgcgatggccaaggcgggtctggccgct
tcgagtctgggagctggcctgggcatgcattccggcagtgagccaaaagctcagaagccg
gctgctgaggggaacgccgaagatgcggatggcagccaccgagcctctggcgtaacgccg
ggaggcacttcgaacaagcccgatttggatgatgacgatccatgggccaaacctgccgca
tcgtctgaggctgtgggcgagccatctgcgtctgcaggtgagccgtctgttgatggtttt
gctccgagcaatccagaccctgcatctgcacaggcgcctgaagagcaccacaagaagcat
gtcgccgtgccggacatgagcgatgacgtggacccatgggcaacgccggcagcacctgtc
gcacacgcacaagatgcgaccgccaatacccaggccggccaagctgagcaatccgccgcg
tctacttcctcaaacgtgggtgccccggctgcggattctgctgccccaacggcatccgct
gacccgtggaaccagcctgctgcgtctgcgccgcaagctgcgccggatccatggaatcaa
ccagctcctccgcaatcggaaccggatccgtggaatcaaccgcagggtcaggctcagcgg
cagaccccatcgcagagtcagggtataccgcaaagccagaactcgggcgctgctgacccg
tggaaccagtcagtgccaccgagccctcagccgcaggttgcggccgaggacgatgagtat
tcgatgagcgaccagtcgcttggcgatgccacggccatgaagatggatgatctcaagaag
ctgttcgaggtcaagaaggtcgaggagtttgcggccgatgacccgaagaatccgaagaac
atccagcccgccaagaagcatacggatgactga
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