Bifidobacterium breve ACS-071-V-Sch8b: HMPREF9228_0705
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Entry
HMPREF9228_0705 CDS
T01844
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
bbv
Bifidobacterium breve ACS-071-V-Sch8b
Brite
KEGG Orthology (KO) [BR:
bbv00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HMPREF9228_0705 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bbv03021
]
HMPREF9228_0705 (rpoD)
Transcription machinery [BR:
bbv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HMPREF9228_0705 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DprA_WH
HTH_20
Motif
Other DBs
NCBI-ProteinID:
AEF27828
LinkDB
All DBs
Position
836226..837644
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AA seq
472 aa
AA seq
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MATKETTATKQTAESSEETETKKKASSTTARKTSAKKTKATKDTTAAKTGEKTSRKTSAK
KVNKEEELSQNDISQSDDPEDLDVDNLDEDLDDVESEDVDDLEDADAESDDEDIDDEDDE
DEEDEGKAASKAPEQPKEKGAYVVSDTDDEEENIIPAGNPKRRVIAAGATADPVKDYLKQ
IGRVSLLNAEQEVDLSERIEAGLYAQHLLDTESEGMEFKRKRELKWAAADGKKAKDHLLE
ANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDWKKGFKFSTYATWWIRQAITR
AMADQARTIRVPVHMVEVINKLSRVQRQMLQDLGREPTPDELARELDMPVEKVQEVQKYG
REPISLHTPLGEDGDSEFGDLIEDTDAIAPSDAVAFSLLQEQFKQVLETLSPREAGVIKM
RYGLEDGQPKTLDDIGRVYGVTRERIRQIESKTMSKLRHPSRSQTLRDFLDQ
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
ttggccacgaaggaaacgacggcaaccaagcagacagccgagtccagcgaggagaccgag
accaagaagaaggccagctctaccaccgcgcgtaagacctccgccaagaagaccaaggcc
acgaaggacaccacggctgccaagaccggtgagaagacttcacgtaagacttcggccaag
aaggtcaataaagaggaggagctttctcagaacgacatcagccaaagcgatgacccggaa
gatcttgacgtcgataaccttgatgaggatcttgacgacgtcgaatccgaggacgtcgat
gatcttgaagatgccgatgccgagtcggacgacgaagacattgacgatgaggatgacgaa
gacgaggaagacgaaggcaaggccgcatcgaaggctcctgagcagcccaaggagaagggt
gcttatgtggtttccgacacggatgatgaagaagagaacatcatccccgccggcaatccg
aagcgtcgtgtgattgcggcaggcgccaccgccgacccggtcaaggactacctcaagcag
attggtcgcgtcagcctgttgaacgccgaacaggaagttgacctgtccgagcgcatcgag
gccggcctgtacgcccagcatctgctcgataccgaaagtgaaggcatggagttcaagcgc
aagcgtgaactcaagtgggccgccgccgacggcaaaaaggccaaggatcatctgctggag
gccaacctgcgactcgtggtctcgcttgccaagcgctataccggccgcggcatgctgttc
ctcgatttgattcaggaaggcaaccttggtctgattcgtgccgtcgagaagttcgattgg
aagaagggcttcaagttctccacctacgccacgtggtggattcgtcaggccattacccgt
gctatggccgatcaggcccgtaccattcgtgtgcccgtgcacatggtcgaagtgatcaac
aagctgagccgtgtgcagcgccagatgctgcaggatctgggccgtgagcctacgccggac
gagctggcccgcgagctggacatgccggtcgaaaaggtgcaggaagtgcagaagtacggc
cgcgagccgatttccctgcacaccccgctcggtgaggacggcgattccgagttcggcgat
ctcatcgaggataccgatgccattgctccgtccgatgcagtggcgttttccctgctgcag
gagcagttcaagcaggtgctggaaaccctgtctccgcgtgaggccggtgtgatcaagatg
cgttacggtttggaggacggccagccgaagaccttggacgatattggccgtgtatatggc
gtgacccgagagcgtatccgccagatcgaatccaagaccatgtccaagttgcgccacccg
tcccgttcgcagaccctgcgcgacttcctggatcaatga
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