Bifidobacterium breve ACS-071-V-Sch8b: HMPREF9228_0747
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Entry
HMPREF9228_0747 CDS
T01844
Symbol
holA
Name
(GenBank) DNA polymerase III, delta subunit
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
bbv
Bifidobacterium breve ACS-071-V-Sch8b
Pathway
bbv03030
DNA replication
bbv03430
Mismatch repair
bbv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bbv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HMPREF9228_0747 (holA)
03430 Mismatch repair
HMPREF9228_0747 (holA)
03440 Homologous recombination
HMPREF9228_0747 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bbv03032
]
HMPREF9228_0747 (holA)
03400 DNA repair and recombination proteins [BR:
bbv03400
]
HMPREF9228_0747 (holA)
Enzymes [BR:
bbv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HMPREF9228_0747 (holA)
DNA replication proteins [BR:
bbv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HMPREF9228_0747 (holA)
DNA repair and recombination proteins [BR:
bbv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HMPREF9228_0747 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta_C
DNA_pol3_gamma3
Mn_catalase
Motif
Other DBs
NCBI-ProteinID:
AEF27399
LinkDB
All DBs
Position
895210..896181
Genome browser
AA seq
323 aa
AA seq
DB search
MAKTVANAPVTVVPGGDSYLNGMRTKELCSRALQARPDAELIELDATSADQYAFDEAVSP
SLLSDTAVVKIINLQNADEKFAETLVSYTKQAAKDPNGSSIVICQHEGGVKGRKIIDQLT
KAGARKVDVPDLKKPDAQLNFVLGEFEKRGRRVEPMAAQQLVSVLGGKTGELAAMCEQLC
FDFEDNPIGLDRANQYLTANPQVTGFAVADKAVEGRTAEAIVMMRAAVEQGTDPIALIGA
LAMKLRTIAKASAVRAGTISQAEAKTNPWVLKNAMRQLGGWTSPGLAHCIRMLAWADEQS
KTNGGDPMYALERCIEDISHKGR
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaacagtagcgaatgcaccggtgaccgtggtgcccggaggcgactcgtacctt
aacggcatgcgaaccaaggaactgtgctcacgggcattgcaggcccgccctgatgccgaa
ctcatcgaactcgacgccacctcagccgaccaatacgccttcgatgaggctgtcagtcct
tcactgctttccgacaccgccgtggtgaaaatcatcaatctgcaaaacgccgatgaaaag
ttcgccgaaaccctggtctcctacaccaaacaggcggccaaagacccgaacggctccagc
atcgtcatttgtcagcatgaaggcggcgttaaggggcgcaagatcatcgatcagctgacc
aaggccggcgctcgcaaggtggacgtgcctgacttgaagaagccggatgcgcagttgaat
ttcgtgctcggcgaattcgagaaacgcgggcgcagggtggagccgatggcggcccaacag
cttgtgtccgtgcttggcggcaaaaccggcgagcttgcggccatgtgcgagcaattgtgt
tttgattttgaggacaatcccattggactcgaccgtgccaatcagtatctcaccgccaac
ccgcaggtcactggctttgccgtggcggacaaagccgttgaaggtcgtaccgctgaagcc
atcgttatgatgcgtgcggcagtggaacaaggaaccgaccccattgcattgattggtgca
ttggctatgaagctcagaaccatcgccaaggcatcggccgtacgtgccggaacgatttcg
caggccgaggcgaaaaccaatccctgggtgctcaaaaatgcgatgcgccaactcggcggg
tggacttctcccggtcttgcgcactgcatccgcatgctcgcctgggccgatgagcagagt
aagacaaacggtggcgacccgatgtatgcgctggagcgttgcatcgaagacatcagtcat
aaagggcggtag
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