Bifidobacterium breve ACS-071-V-Sch8b: HMPREF9228_0810
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Entry
HMPREF9228_0810 CDS
T01844
Name
(GenBank) apurinic endonuclease (APN1)
KO
K01151
deoxyribonuclease IV [EC:
3.1.21.2
]
Organism
bbv
Bifidobacterium breve ACS-071-V-Sch8b
Pathway
bbv03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
bbv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HMPREF9228_0810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbv03400
]
HMPREF9228_0810
Enzymes [BR:
bbv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.21 Endodeoxyribonucleases producing 5'-phosphomonoesters
3.1.21.2 deoxyribonuclease IV
HMPREF9228_0810
DNA repair and recombination proteins [BR:
bbv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
HMPREF9228_0810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AP_endonuc_2
Motif
Other DBs
NCBI-ProteinID:
AEF27008
LinkDB
All DBs
Position
948223..949077
Genome browser
AA seq
284 aa
AA seq
DB search
MTGLLIGSHLSTAGGWNELLKRSPEEGGTAFAFFPRSPYGKRSKALDLAGAAVFGAQLRA
EGYGPLVVHAPYVYNLAGKDEAKRAFAIEALAEDIKLLTAIRETGQEVYINIHPGAHVGQ
GAETGCRLISEGLNQVFERTTGVMVLLETMAGKGTECGRNFEELATIMNGVENKANVGVT
FDTCHVLDAGYDLVNDYDGVMRQLDVVIGLAKVKAIHVNDSQFGLDSHKDRHANIGEGQL
GIPFFTRLVNDPIMAKLPMILETKEQTPATHRDEIELLRGLVQK
NT seq
855 nt
NT seq
+upstream
nt +downstream
nt
atgacgggtttgcttatcggatcgcatttgtcgacggctggcggctggaacgagctgctg
aaacgctcccctgaggagggcggcaccgcgttcgcgttctttccgcgatctccgtatggc
aaacgttccaaggcgctcgacctggccggcgcggcggtgttcggcgcacagctcagggcc
gaaggctatgggccgttggtcgtccatgcgccgtacgtctacaatctggccggcaaggat
gaggccaagcgcgcatttgccatcgaggcgctggccgaggatatcaagctgctgaccgcc
atccgcgagaccggccaggaggtgtatatcaacattcatcccggcgcgcatgtgggccaa
ggcgccgagaccggctgccggctgattagcgagggactgaatcaggtgttcgaacgtacg
accggcgtcatggtgctgctggagaccatggccggcaaaggcacggaatgcgggcgcaac
ttcgaggagctcgccacgatcatgaacggcgtggagaacaaggcgaacgtcggcgtcacg
ttcgacacctgccatgtgctggatgccggatacgacttggtgaacgactacgacggtgtg
atgcgccagttggatgtggtgatcggattggccaaggtcaaggcgattcacgtgaacgat
tcgcagtttggcctcgactcgcataaggatcgtcacgccaacatcggggagggtcagctc
ggcatcccgtttttcacgcgactggtcaacgacccgatcatggccaagctcccgatgatc
ctcgaaaccaaggagcagacgcccgccacgcatcgcgacgagatcgagttgttgcgcgga
ttggtgcaaaagtag
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integrated database retrieval system
