Bifidobacterium breve ACS-071-V-Sch8b: HMPREF9228_0980
Help
Entry
HMPREF9228_0980 CDS
T01844
Name
(GenBank) putative ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
bbv
Bifidobacterium breve ACS-071-V-Sch8b
Pathway
bbv03420
Nucleotide excision repair
bbv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bbv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HMPREF9228_0980
03430 Mismatch repair
HMPREF9228_0980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbv03400
]
HMPREF9228_0980
Enzymes [BR:
bbv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HMPREF9228_0980
DNA repair and recombination proteins [BR:
bbv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HMPREF9228_0980
MMR (mismatch excision repair)
Other MMR factors
HMPREF9228_0980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
AEF26927
LinkDB
All DBs
Position
complement(1123826..1126501)
Genome browser
AA seq
891 aa
AA seq
DB search
MYDEPEVIARSAQELVGDLNPQQAEAVQYRGQALLIGAGAGSGKTRVLTRRIAWILSQFG
AWPSQILAITFTNKAAAEMRERLGSLIGPVAQRMWVSTFHSACVRILRRDGKSIGLKSGF
SIYDSADSERLVKIIATEFNLDIKRYTPRSILGHISDLKNNLTGWKENLAVHAPDFTPGQ
RGYQFGTVGDLEAIYAVIYAEYEHRLALANAVDFDDLIGRTVELLRTDPAVAEYYHHRFR
YILVDEYQDTNHAQYVLVRELAGVDTGEKAIPGAPNAGKAGPAWITVVGDSDQSIYAFRG
ADIRNIQDFEQDFPNAKTIMLEQNYRSTQTILDAANAVISNNEGRKPKKLWTALGKGEPI
VGYAADNAQQEAQWVATEIARLHAEEDIAYSDMAIMYRANAQSRSLEEALINAGLPYQLV
GGTKFYERREIKDALAYLQALVNPDDDVNLRRILNVPKRGLGDRAEGILLAYARERGTSF
FYALMHLDEIQDVPTRTATQLKAFRDLMGELSQFTRAHDAKPSEIVAEVLEKSGLRAELE
KSVDPQDASRLENLSQLQSTAAEFEQNTTDATLSAFLETTALVADSDQLPGEAEDSGKVT
LMTLHTAKGLEYPVVFLTGMEQGTFPHSRSMEDTTELQEERRLAYVGITRAKQRLYVTRA
AVRSQWGQAADMMPSQFLDEIPDSLIDWKRREAGVERMRANWESDGFADDYGGWDDDDFG
GTTFGGSSTFGSRGSGSSYGSRSHYGSSSYGSGSSYGSRSGGSSYGSRSSSSYGSRSRSG
SSYGSGSGSSYGSRSRSSSASGGTRGGKVTTRHTTPKSGSAGSSMPSSKLAKDNGLNISD
FAVGDMISHDQYGLGKVTDAQDKGRNSVITVDFGSAGVKRLMLRVAPIEKL
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
gtgtacgacgagccggaagtcatcgcccgcagcgcgcaggaactcgtaggcgacctgaac
ccgcagcaggccgaagccgtgcaataccgcggccaggcgctgctgatcggagccggcgcc
ggttccggcaaaacccgagtcctcacccgacgcatcgcatggatcctgagccagttcggc
gcatggcccagccagatcctggccatcaccttcaccaacaaggccgccgccgagatgcgc
gaacgactcggctcgctgattggcccggtggcccagcgtatgtgggtctccaccttccac
tccgcctgcgtgcgcatcctgcgccgcgacggcaaatccatcggcctcaaatccggcttc
tccatctacgattccgccgactccgagcgactcgtcaaaatcatcgccaccgaattcaac
ctcgatatcaagcgctacaccccgcgttcgatcctcggccacatctccgacctgaaaaac
aacctgaccggctggaaggaaaacctcgccgtccatgcgcccgacttcacgcccggccag
cgcggctaccagttcggcacggtgggcgaccttgaagccatctacgcggtgatatacgcc
gaatacgagcacaggctcgctctggccaacgccgtcgacttcgatgatctgattgggcgc
acggtcgaactgctgcgcaccgacccggccgtcgccgagtactaccatcaccgtttccgc
tacattctggtcgacgagtatcaggacaccaaccacgcccagtatgtgctcgtacgcgag
ctggccggtgtggacacaggggagaaggccattccgggcgcgccgaacgccggcaaggcg
ggccctgcttggatcaccgtcgtgggcgattccgaccagtccatctatgccttccgcggc
gccgacatccgcaacatccaagatttcgaacaggacttcccgaacgccaagaccatcatg
ctcgaacagaactatcgttcgacgcagaccattttggacgcggccaacgcggtgatcagc
aacaacgagggacgcaagcccaagaaactgtggacagcactcggtaaaggcgagccaatc
gtcggctacgcggcggataacgcccagcaggaggcccagtgggtggccaccgaaatcgcc
cgactgcacgccgaagaagatatcgcctactctgacatggcgattatgtatcgcgccaac
gcgcagtcccgctcgctcgaagaggcgttaatcaacgcagggctgccgtaccagctcgtc
ggcggcaccaagttctacgaacgccgtgaaatcaaggacgcgctggcctacctgcaggcg
ctggtcaacccggatgatgacgtgaacctgcgtcgaattttgaacgtgcccaagcgcggg
ctcggcgatcgtgccgagggcatcctgctcgcctatgcgcgcgaacgtggcaccagcttc
ttctatgcactcatgcatttggatgaaattcaggacgtgcccacacgtaccgccacgcag
ctcaaggccttccgtgatttgatgggtgagctctcgcaattcacgcgagcacatgacgcc
aagcccagcgagattgtggccgaagtgctggagaagtccggcttgcgtgcagagctggaa
aagtccgtggacccgcaggacgcctcccgtttggaaaacctctcccagctgcagtccacc
gcagccgagtttgagcagaacacgaccgacgccacgctatccgcattcctggagaccacc
gcgctcgtggccgattccgaccagctgcccggcgaggcggaggattccggcaaagtgacg
ctgatgaccttgcacacggccaagggcctcgaatacccggtggtattcctgaccggtatg
gaacagggtacgttcccacactcgcgctcgatggaagacaccacagaactgcaggaagaa
cgccgacttgcctatgtgggtattacccgcgccaagcagcggctgtacgtcacgcgcgcg
gctgtacgctcccagtggggtcaggccgccgatatgatgcccagccagttccttgacgag
attccggattcgctgatcgactggaagcgtcgtgaggccggcgtggaacgcatgcgcgcc
aactgggaatccgatggattcgccgacgattacggcggctgggatgatgacgattttggc
ggtacgacgttcggtgggtcctcgacattcggctctcgcggttcgggttcgtcgtatggc
tcgagatctcattacggctcgtcaagctatgggtctggctcgtcctatggctcccgttcg
ggcggttcatcgtatggctcacgttccagctcctcctacggttcccgctcgcgctcgggt
tcgtcctatggttcgggttccggctcttcatatggttctcgttcccgttctagttcggcg
tccggcggcactcgtggcggcaaggtcactacgcgccacaccacgccgaagtccggttcc
gccggatcttccatgccaagttccaagctcgctaaagataatggactgaatatctctgac
tttgctgtgggcgacatgatcagccacgatcagtacggtctcggcaaggtcaccgacgcg
caggacaagggccgcaattcggtcatcaccgtggacttcgggtcagccggcgtcaaacgc
ctcatgctccgcgtggcaccgatcgaaaagctgtga
DBGET
integrated database retrieval system
