Bifidobacterium breve ACS-071-V-Sch8b: HMPREF9228_1062
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Entry
HMPREF9228_1062 CDS
T01844
Name
(GenBank) 3'-5' exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
bbv
Bifidobacterium breve ACS-071-V-Sch8b
Brite
KEGG Orthology (KO) [BR:
bbv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bbv03016
]
HMPREF9228_1062
Enzymes [BR:
bbv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
HMPREF9228_1062
Transfer RNA biogenesis [BR:
bbv03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
HMPREF9228_1062
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Motif
Other DBs
NCBI-ProteinID:
AEF27664
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All DBs
Position
complement(1215834..1217081)
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AA seq
415 aa
AA seq
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MPDVTSTIEGYHHVCEALADASGSLAADAERASGFRYGHEDWLIQCKREGAGIALLDPIA
LTQSGADWNEFNEAVGDATWILHDSLMDLPGFADLGLQPKALFDTEIAARLLGLHRFGLA
AVTEHYLGITLAKEHSAADWSYRPLPRDWRNYAALDVEVLIELENLMRRDLRAAGKDEWA
EEEFTHALSEGLAPRKPHPVPWLRISRITQLSRDPQGLAIAKSLWQERDKLARQHDIAPS
LLLSDSSIIEAATRKPHNAAQFRALRSLNERVRIRTGTEQDKMFERYAPIQRAVKPKVWK
EVIDRAMALRPSQWPSMPAPAPDENGIVNAPRSMRLWQQRHPDRYDRLQRVRRVITSIAE
DTRTPVEMIIKPQILRNLCWVENPAEVDVEEFLIAQGARNWQVKLIAPSVSGVIM
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
gtgccggatgttacctcgacgattgaaggctatcatcacgtctgcgaagcgttggctgat
gcttctggctccttggccgccgatgccgaacgcgcatctggattccgttatggccacgag
gattggctgattcaatgcaaacgagaaggtgcgggcatcgcattgctcgaccccatcgcc
ttgacccaatctggtgccgactggaacgaattcaatgaggccgtgggcgatgccacttgg
attttgcatgattccctgatggatttgccgggattcgctgatctgggacttcagccgaag
gcgctgttcgacacggagatcgccgcgcgtctgctcggtttgcatcgattcggattagcc
gccgtcaccgaacattatcttggcatcactttggccaaggaacattctgcggctgactgg
tcctaccgcccgctgccacgagactggcgcaactatgcggcgcttgacgtggaagtgctg
atcgagctcgaaaacctgatgcgccgcgatctgagagccgccggcaaggacgagtgggct
gaagaggaatttacccatgcactgtccgaaggactcgcccctcgcaaaccccatccggtt
ccgtggctgcgcatttcccgcatcacccagctgagccgtgatccgcagggattggccatc
gccaagtctctgtggcaggagcgggacaaactggcccggcagcatgacattgcccccagc
ctgctgttgtctgattcctcgattatcgaggctgcgacgcgcaagccgcataatgccgcc
cagtttcgggctctgcgctcgctcaatgagcgtgtgcgcattcgcaccggcaccgagcaa
gacaagatgtttgaacgttatgccccaatccagcgtgccgtcaaacccaaggtttggaaa
gaggtcattgatcgggccatggcgctgcgcccctcccaatggccgagtatgccggcaccc
gcgccggacgagaacggcatagtgaatgcaccgcgttcgatgcgactctggcagcaaagg
caccccgaccgatatgaccgactgcaaagggtccgtcgcgtgatcacttcgatagccgaa
gatacgcgtacgccggtcgagatgattatcaagccgcagattctgcgcaacctatgctgg
gtggagaatccggccgaagtggacgtcgaggagttcctgatcgcgcagggcgcaagaaac
tggcaggtgaaactcattgcaccgtccgtaagtggcgttattatgtag
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