Bifidobacterium breve ACS-071-V-Sch8b: HMPREF9228_1216
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Entry
HMPREF9228_1216 CDS
T01844
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
bbv
Bifidobacterium breve ACS-071-V-Sch8b
Pathway
bbv03420
Nucleotide excision repair
bbv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bbv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HMPREF9228_1216
03430 Mismatch repair
HMPREF9228_1216
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbv03400
]
HMPREF9228_1216
Enzymes [BR:
bbv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HMPREF9228_1216
DNA repair and recombination proteins [BR:
bbv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HMPREF9228_1216
MMR (mismatch excision repair)
Other MMR factors
HMPREF9228_1216
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_12
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AEF26679
LinkDB
All DBs
Position
complement(1388034..1389581)
Genome browser
AA seq
515 aa
AA seq
DB search
MEQAQQILEGLDEQQRRAATTLNGPVRIIAGAGAGKTRTVTRRIAYACATGAWKPERALA
VTFSVKAAAEMRARLEQLGLQGGTSGVTAATFHSAALRQLNSVWADVCEAPFPHLIENQR
DTVSRAITRATAVRDIDALTVRDVLAEINWAKISLVPIDDYARISVEANRQPPAGFDAAR
FAAIYDAYEQEKTSQGEIDFDDILLLVCHIMDDFPEAAAQIRSSIGWLTVDEYQDVSPLQ
HRLLNLWLGGGGPNGKAAMNRNVCVVGDPAQTIYSFAGASSWHLLQFADEFGPLSADINL
NTDYRSTPEVVGLANRVLAAAPNREDYLKLVSAREKGVRISRTAYDTDDLEAQGVAARIA
RLVAQGAKPSDCAILTRINAQQPVFGAALRAARLKFRVRKDSGWQSSSLADDATTRRALL
EAMGLDATGSQQSTDPGVMISTIHAAKGLEFKHVFLVGCSEGLLPYGSPEPGETLEEERR
LMYVGVTRAEDSLHLSYARTKDGYGAQQRRPSRFL
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atggaacaagcgcagcagattcttgaagggctcgatgagcagcagcgccgggcggcgact
acgctgaatggcccggtgcgcatcatcgccggtgcaggcgcaggcaagacccgtaccgtt
acgcgacgcatcgcctatgcctgcgcgacgggagcatggaagcccgagcgggcgcttgcc
gttacgttttcggtgaaagccgctgccgaaatgcgtgctcgacttgagcagctggggctg
caaggcggtacatccggtgttaccgccgctacttttcactctgcggcattgcgccagctc
aacagtgtgtgggccgacgtctgtgaagcgccattcccgcatctcatcgaaaatcagcgt
gacaccgtatctcgtgccatcactcgtgctaccgctgtacgagatattgatgcactgacc
gtgcgcgatgtactggctgaaatcaattgggccaaaatttctctggtacccatcgatgat
tacgcgcgtatcagcgtagaggccaatcgtcagccgcccgcagggttcgatgccgctcga
ttcgccgctatctatgatgcgtatgagcaagagaaaacatcgcaaggagaaatcgatttt
gacgacatcctgctgctggtatgccacatcatggatgattttcccgaagcggcggcgcag
attcgttcctccatcggctggctcaccgttgatgagtatcaggatgtttctccgctgcag
catcgtttgctgaacttatggcttgggggaggcgggccgaatggcaaggctgctatgaac
cgcaatgtatgtgtggtcggcgaccctgcacagaccatctactcgttcgcgggtgcatcc
agctggcatctgttgcagttcgccgatgagttcggccctctgtctgcagacatcaacctc
aacaccgactaccgttcgactcctgaagtggtgggtctcgccaatcgggtgcttgccgcg
gcccccaatcgtgaggattatttgaagctggtttccgccagggagaagggggtgcgcatc
agccgaacggcctatgacaccgatgacctggaagcacaaggtgtggcggctcgcatcgca
cgacttgttgcacagggtgcgaagccctccgattgcgcgattctgacgcgcatcaacgcg
cagcagccggttttcggtgcggcattgcgcgcggcaaggctgaaattccgcgtgcgtaag
gattccggatggcagtcttcgtcgctcgcggatgatgccacgacacgcagggccctgttg
gaagccatgggattggacgccacaggcagccagcagagcaccgaccccggcgtcatgatt
tccaccatccatgcggccaaaggtctggaattcaaacacgtctttctggtaggctgctcc
gaagggctattgccgtacgggtcaccggaaccgggggagacgttggaagaggagcgacgg
cttatgtacgtgggcgtcacacgagccgaggactcgctgcatctgtcatatgcgcggacc
aaggatgggtatggggcgcagcagcgccgcccttcccgcttcttgtga
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