Bifidobacterium breve ACS-071-V-Sch8b: HMPREF9228_1253
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Entry
HMPREF9228_1253 CDS
T01844
Name
(GenBank) putative excinuclease ABC, A subunit
KO
K03701
excinuclease ABC subunit A
Organism
bbv
Bifidobacterium breve ACS-071-V-Sch8b
Pathway
bbv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bbv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HMPREF9228_1253
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbv03400
]
HMPREF9228_1253
DNA repair and recombination proteins [BR:
bbv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HMPREF9228_1253
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HMPREF9228_1253
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_DNA-bind
nSTAND1
AAA_16
BCA_ABC_TP_C
AAA_21
AAA_25
AAA_29
ATPase
DUF7577
DnaJ_CXXCXGXG
DUF463
DUF4350
Anti-TRAP
DUF7351
T2SSE
MobB
Lar_restr_allev
RecA
RNase_E_G_Thio
HUTI_composite_bact
Zot
Motif
Other DBs
NCBI-ProteinID:
AEF26414
LinkDB
All DBs
Position
complement(1427960..1430473)
Genome browser
AA seq
837 aa
AA seq
DB search
MPSMTNNQRPQAIEVRGARVHNLKNVDIDIPLGELVGVAGVSGSGKSSLALGVLYAEGSR
RYLEALSTYTRRRLTQANRAQVDEVLHVPAALALHQRPTVPGIRSTFGTMTELLNSLRLL
FSRVGSHVCPHCGARNEPTLNVAAGLPITCAQCGKEFHAPGAEALAFNSAGACPTCSGTG
IVREVNRAALVPDESKSIDDGAVLPWGSLMWDLMKQVCGAMGVRTNVPFSELTPEERDIV
FNGPAVKKHILYKPKKGDDFAELDFTYFNAVYTVENALAKAKDEKGLKRVARFLKEGPCA
DCGGTRLSVAARAPHVRGLNLAEASAMTLDAAVDWVRGVPESLPADMRPMATNICESFLD
VARRLLDLGLGYLALDRAGATLSTGERQRVQLARAVRNRTTGVLYVLDEPSIGLHPSNVD
GLLGVMRDLVADGNSVVVVDHDVRVLKAAGHLIEMGPVAGAEGGHVIAQGTVDEVAANPS
SRIAPFLADNVSARIRERVAEPQVFDLGHIRMTTSQLHTVKSLDVDIPCGRLVAVTGVSG
SGKTTMVLESLIPALKAQAAGEQLPEHVRELEAEGIHRANLIDATPIGANVRSTVATYAD
IHDELRRAFARCDAAKTGGWKAGDFSYNTGRLRCPTCDGTGSISLDVQFLPDVTIECPDC
GGSRYASEAGAIRRAVKGESHLSLSLPQLMAMSVDQALAVTHDLKKVHARLTTLHDLGLG
YLTLGEPTPALSGGEAQRLKLASEMGKAQSDAVFVFDEPTIGLHPLDVRVLLGVFDRLVA
SGATVVVIEHDLDVIANADWIIDMGPGGGESGGRIVATGTPEQVAANPSSITGRYLG
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
gtgccgagcatgaccaacaatcaacggccacaggcaatcgaagtgcgcggggcgcgcgta
cataacctgaagaacgtcgacatcgacattccgctgggcgaactggtgggagtggccggc
gtctccggttctggcaaaagttcgctggcgctcggcgtactgtatgcggaaggctcgcgg
cgctatctggaagcgctgtccacgtacacgcgccgccgcctgactcaagccaaccgcgcc
caagtggacgaagtgctgcatgtgccggccgcgctggccctgcaccagcggcccaccgtg
cccggtatccgttcgacgttcggcacgatgaccgaactgctcaatagtctgcgactcctg
ttctcccgcgtgggctcgcacgtgtgcccgcattgcggggcgcgcaacgaaccgacgctc
aacgtggcggccggcctgcccatcacctgcgcgcaatgcggtaaagaattccatgcgccc
ggtgccgaagcactcgccttcaactcggccggtgcctgcccgacctgctctggaaccggc
atcgtgcgcgaagtgaaccgcgcggctttggtcccggatgaatcgaaaagcatcgacgac
ggtgcggtgctgccatggggctcgctcatgtgggaccttatgaagcaggtgtgcggcgcg
atgggcgtgcgcaccaacgtgccgttcagcgagctcacgcccgaagagcgtgacatcgta
ttcaacgggccggccgtcaaaaagcatattctttacaagccgaagaaaggcgacgatttc
gccgaactcgatttcacctacttcaacgccgtatacacggtggagaacgcgctcgccaaa
gccaaggacgagaaaggcctgaagcgcgtggcccggtttctcaaggaggggccatgcgcc
gattgcggcggcactcgactgagcgttgccgcccgagccccgcatgtgcgcgggctgaac
ttggccgaagccagcgcgatgaccttggatgcggcggtggattgggtgcgcggcgtgccg
gaatctctgcccgccgacatgcggccgatggccaccaacatctgcgaatcattcctggac
gtggcccgccgactgttggatttgggcctcggctatctggcgcttgaccgcgccggtgcc
acgctttcgaccggtgaacgccagcgtgtgcagctcgcccgtgccgtgcgcaaccgcacc
actggcgtgctgtatgtgcttgacgagccatccatcgggctgcacccctcgaatgtggac
ggactgctcggcgtgatgcgcgatctagtggcggacggcaattccgtggtggtcgtggac
catgacgtgcgcgtgctcaaagccgccggccatctcatcgaaatgggaccggttgccggc
gccgaaggcgggcatgtgatcgcgcaaggcacggtagacgaagtggcggcgaatccaagt
agtcgtattgcgccgttcttggccgataatgtgagcgcgcgcatccgtgagcgcgtggcg
gaaccgcaggtgttcgaccttggccacatccgcatgacaaccagccagttgcatacggtc
aagtcgctggacgttgatattccgtgcggccggctcgtggcggtgacaggcgtctccggc
tccggtaaaaccacgatggtgctcgaatcgctgattcccgcgctcaaagcgcaggcggcg
ggggagcagttgccggaacatgtgcgtgaacttgaggccgagggcatccatcgtgcgaat
ctcatcgacgccacgccgattggcgcaaacgtgcgctccaccgtggccacctatgccgat
attcacgacgaactgcgccgcgccttcgcccgatgcgatgcggccaagacgggcggctgg
aaggccggcgatttctcgtacaacactggacggctgcgttgccccacgtgcgacggcacc
ggttcgatctcactcgacgtgcagttcctgccggacgtgaccatcgaatgcccggactgc
ggcggttcccggtatgcgtctgaagccggcgcgattcggcgtgcggttaagggagaatct
cacctttcactgagtctgccccaactcatggcaatgagcgtggatcaggcattggccgtg
acccacgacctcaagaaggtccacgcacgtctgaccaccttgcatgatttgggtcttggg
tatctgacactcggcgaaccgacgccggcgctttcgggcggcgaagcccagcggttgaag
ctcgccagcgaaatgggcaaagcccaatcggacgcggtattcgtgttcgatgagccgacc
atcggtctccacccgctcgacgtgcgtgtgctgctgggcgtgttcgaccggcttgtggcg
agcggcgcaacagtcgtggtcatcgaacatgaccttgacgtgatcgccaatgcggactgg
atcatcgacatgggtccgggcggcggcgaaagcggcggacgcatcgtcgccaccggaacg
ccggaacaggtcgcggccaacccaagcagcattactgggcggtatttagggtaa
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integrated database retrieval system
