Bifidobacterium breve ACS-071-V-Sch8b: HMPREF9228_1356
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Entry
HMPREF9228_1356 CDS
T01844
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bbv
Bifidobacterium breve ACS-071-V-Sch8b
Pathway
bbv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMPREF9228_1356 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbv03019
]
HMPREF9228_1356 (recQ)
03400 DNA repair and recombination proteins [BR:
bbv03400
]
HMPREF9228_1356 (recQ)
Enzymes [BR:
bbv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HMPREF9228_1356 (recQ)
Messenger RNA biogenesis [BR:
bbv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HMPREF9228_1356 (recQ)
DNA repair and recombination proteins [BR:
bbv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HMPREF9228_1356 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
HRDC
RQC
RecQ_Zn_bind
Rhodanese
DUF6587
ResIII
Motif
Other DBs
NCBI-ProteinID:
AEF27603
LinkDB
All DBs
Position
complement(1537187..1539106)
Genome browser
AA seq
639 aa
AA seq
DB search
MTAHEAALGALKQYFGYDSFRPGQQGIVDALLDGRDVLGVMPTGAGKSVCYQIPAALMPG
VTIVISPLISLMRDQVDALNDLGLPAAFVNTTQTPDEQAMVFAQAAAGQLKLLYVAPERL
ETGRFRDFAARTPISLIAVDEAHCVSQWGQDFRSSYLGIGDFIVGLPKRPPVGAFTATAT
ERVRRDIVGLLGLRNPAVTVTGFDRPNLYFDVVKLETKYKAAWVANYVAAHPDESGIIYC
ATRKTTEALAATLNQMGHAAVAYHGGMSSDAREAAQHDFITDKVPVVVATNAFGMGIDKS
DVRYVIHHNLPESIEAYYQEAGRAGRDGEPSRCTLLWNESDIVTRRRLLDSDYENERMTP
EDQEIVRQSKRRLLDGMVGYCRTADCLHRYMTRYFGQEITPTDAPSDTHEGKCGACSNCE
STFETIDVTSVAQAISRCVHDVNQRVGSGKIVKILRGSKAQDLAWLNPEQMPTFGMLKDV
NEARVRDVLSQMATDGYLFIAEGRMPIVMFGARAAETAASDFHYEIKRVERKSASVSSRH
GGVSSESASASAAMESYIPDDDEEALFQKLRELRRTIAQEIGKPPYIVFSDKTLRDMACI
KPITNAQFLAVNGVGQHKLDLYGKRFMEAVASFNAGNAQ
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atgacggcacatgaggcggcgctgggggcgctcaagcaatacttcggttacgattcgttc
cggccaggccagcaaggcatcgtcgatgctttgctggatggccgggacgtactgggcgtt
atgcccaccggtgccggcaaatccgtgtgctaccagattcccgccgcgctcatgcccggt
gttaccatcgtgatctcgccgctgatctccctcatgcgtgatcaggtcgatgccctgaat
gatttgggcttgccggccgcatttgtcaacaccacccaaaccccggatgagcaggccatg
gtgttcgcccaggctgcggcgggtcagctcaaactgctgtacgtggctccggaacgattg
gaaaccggccgattccgcgacttcgccgcccgcacgccaatctccctgattgccgtggac
gaggcacactgcgtctcccaatgggggcaggatttccgttcgtcataccttggtattggc
gacttcattgtcggcctgcccaagcgcccgccggtcggcgcattcaccgccaccgccacc
gagcgcgtgcgccgcgacatcgtgggattgctgggtttgcggaatcctgccgtcaccgtc
accggattcgaccggccgaacctgtatttcgacgtggtcaagctggaaaccaaatacaag
gccgcgtgggtggcgaactatgtggctgcccacccggacgaatccggcatcatctactgt
gccacccgcaagaccaccgaggcgctcgcagctacgctgaaccagatggggcacgcggcg
gtcgcctaccatggcggcatgtcgtcggacgcgcgtgaagcggcgcagcacgacttcatc
accgacaaggtgccggtggtcgtggccaccaatgcgttcggcatgggtatcgacaagtcc
gatgtgcgatacgtcatccaccacaacttgccggaatccatcgaggcctattatcaggag
gccggccgcgccggacgtgacggcgagcccagccgctgcacgctgctgtggaacgaatcg
gatatcgtgacccggcgccgtctactcgacagcgattatgagaacgagcgcatgacccct
gaagatcaggaaatcgtgcggcagtccaaacgacgcctgctggatggcatggtgggctat
tgccgcaccgccgattgtctgcaccggtacatgacgcggtatttcggacaggaaatcacg
ccgacggatgcgccctcggatacgcatgagggcaagtgtggtgcctgctcgaactgcgaa
agtactttcgagaccatcgacgtcaccagcgttgcccaggcgatcagccggtgcgtgcat
gatgtgaatcagcgggtcggttccggcaaaatcgtcaagattctacgcggctccaaagcg
caggacctggcatggctcaatccggaacagatgcctacgtttggcatgctcaaggatgtg
aacgaggctcgcgtgcgcgatgtgctgagtcagatggccaccgatggctacctattcatc
gccgaagggcgtatgccgattgtcatgtttggcgcgcgtgctgctgaaaccgccgcgtcg
gatttccattatgaaatcaaacgtgtggagcgtaagtcggcttcggtaagtagtcgacat
gggggagtgtccagcgaatcagccagtgcttccgctgcaatggaatcctatattcctgac
gatgacgaggaggcgctgttccagaagctgcgcgaactgcgtcgcaccatcgcccaggaa
atcggcaaaccgccgtacatcgtcttttccgacaagacattgcgagacatggcctgtatc
aagccgattaccaatgcgcagtttttggctgtcaacggtgtgggccagcacaagctcgac
ctttacggcaagcgctttatggaagccgtcgcctcgtttaacgccgggaatgcgcaataa
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