Bifidobacterium breve ACS-071-V-Sch8b: HMPREF9228_1391
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Entry
HMPREF9228_1391 CDS
T01844
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
bbv
Bifidobacterium breve ACS-071-V-Sch8b
Pathway
bbv03420
Nucleotide excision repair
bbv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bbv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HMPREF9228_1391
03430 Mismatch repair
HMPREF9228_1391
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbv03400
]
HMPREF9228_1391
Enzymes [BR:
bbv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HMPREF9228_1391
DNA repair and recombination proteins [BR:
bbv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HMPREF9228_1391
MMR (mismatch excision repair)
Other MMR factors
HMPREF9228_1391
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
XdhC_CoxI
DEAD
Motif
Other DBs
NCBI-ProteinID:
AEF27583
LinkDB
All DBs
Position
complement(1581872..1585807)
Genome browser
AA seq
1311 aa
AA seq
DB search
MSAFIPSVEQAAIINAPAQDDVLVVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTR
KAAGELLERVSAAVSREDSPAAQGAQTPGASTPNFDRAFLKPAIFTYDAFFQTIVRQYGL
LVGFDQNTQPLSEAGALQLATEVIDEHMDQALSEDLGAFTSLARSVLALSGAIGSAMIGS
GCTGFDEAVERVRQWDSAFVDALRLALENEDIPDIEPTIPKIKRLKKDSDTDWQAKLDDR
AQRLHARCAYHCAQLLEITRKREVLLQLVEAYAQAKRQKNMAEFSDFTIAAYQLIERFPS
IGERTRCRYSHVLLDEYQDTSTTQAALLAALFHVNNSERCAVNAVGDPFQSIYAWRGASP
GAFRMFQRDFHMPAESKPFPLSVTRRNSRIVLEAANDLTLPLRSRPARPSSSLMREVDVS
SLDPMPDAPEGTLGVLGLATAGQEIDAVVRFCKAAIARYRDAGAAQEAPVAVLFRSRSHM
PEYQEVLEKAGLTTFVVGYSALLERPEIRDVLALLHVVADHTDTGALMRLLATPRFGLSS
DDLTALACAAEAQNMEQRFRALVQAGVAPADTPRSQWGAVVREHRDQVANAVFLPDLLMQ
DNSSVRLDQLSAYGRHAVEQAVEALRQVHDMVGRSITDVIRAAIEALNLDIDTVLAGALR
DPQHRVNPSLARMPMDSIVDLVDTYTQEIAVEQTPTLRGFMAWVDHLATVEDEAAKLPGS
PVDVELMTVHQSKGLEWDAVAVVGLNAGGFPSNQGDHLKVVLDDSHPGGTEQGQWTTPEY
HESADSWLTSPVAVPVPVRADAGILPRFPHDADVHGDPIDSLRNLDDVELIDDEVFGSMR
EFGDGVEEVDPQSWYLTQSEEYGRRLHADERRLAYVALTRARNDALLTYCRYTGESSRDC
TNVPKGSRAASPSNFWLEVHDALHGHDHAIEAQAYVEGLGSEVALVSPQGDPIDPPEGFI
VGENAEQYCDAVVGDAWRTPLEQTSGRNALPWPASLGEDTAEHLTRGLALVRNAINGKRN
AKDDGHNPAGPLLQRAQLLVDDDDLMTGTLEGAALDRAVKAKAQRILAAGRQNVTSLQAR
VGGMSQQEERSYWRSVIRPIPRVSSPAAEAGTRFHDWAERFINAGKPDEAASSVDSSAAE
IITTGNGVSRSDLLADLNAIDQQSVPVCDRNLMIWQQRLASSSWAQRTPVWAERSIVVDV
PEVGIVNGKLDAVFLGGINPADTSKRYTVVDWKTGHRPTKPDDVEHKLAQLDMYRLLLAA
VEGVELDSIDATLYYVSEPDEGLRELHARAKTKQEILTELSSGIPEQSDND
NT seq
3936 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcttttattcccagcgtagaacaggcggccatcatcaacgctcccgctcaggat
gacgtactggtggtggccggagccggctctggcaaaacctttacgatgacccagcgcatc
atcgcgctcatcaaccgcggtgttgcgccggaacgcatactgggcctcacctttacccgc
aaagctgccggagagttgctcgagcgtgtatccgcagcggtatcgcgcgaagattctcct
gcagcacagggcgctcagactcctggcgcctcaactcccaacttcgacagggcgttcctg
aaaccagccatttttacctatgatgccttcttccaaaccatcgtgcgccaatatggtctg
ttggttggtttcgatcagaatactcagccactcagcgaggctggagcgctccagctcgcc
actgaagtcatcgatgagcatatggatcaggctctgagcgaggatttgggcgcattcacc
agtcttgccagaagcgtgctggcattatccggtgcaatcggcagtgccatgattggttcc
ggctgcaccggattcgatgaggctgtggaacgcgtgcgtcagtgggactcggctttcgtc
gacgcgcttcgcctcgctcttgagaacgaggacattcccgatatcgagccgacaattccc
aagatcaagcgactcaaaaaagacagcgacaccgattggcaggcgaagctggacgacagg
gcgcagcggttgcatgcgcgctgtgcctaccattgtgcacaactgttggaaatcacgcgc
aagcgcgaagtgctgctgcaattggtcgaggcctacgcacaagccaaacgccagaagaac
atggcggaattctctgatttcaccattgcggcatatcagctcatcgagcgattcccctcc
atcggagagcgtacgcggtgtcgctacagtcatgtgctgctcgacgaataccaggacacc
tccaccacgcaggcggcactgcttgccgcattgttccatgtgaataactccgaaaggtgc
gcggtcaacgccgtgggcgatccgttccagtccatctatgcttggcgaggagccagcccg
ggtgcgttccgcatgttccaacgtgactttcatatgccagcggagtccaagccattccct
ctttcggtcacacgccgtaacagtcgcatcgtgcttgaagcggccaacgatctgacgctg
ccgttgcgttcgcgccctgcccgtccctccagttcgttgatgcgcgaggtcgacgtatcc
tcgcttgaccccatgcctgacgcgcctgaaggcacgcttggtgtgctgggattggccact
gcggggcaggaaatcgatgctgtagtgcgcttctgcaaggccgccatcgcgcggtatcgc
gatgccggggccgcgcaggaggcgccggtcgccgtgctgttccggtccagatcccatatg
cccgagtatcaggaggtattggagaaggccggtctcaccacgtttgtggttggatattcc
gctctgctggagcgcccagaaatccgcgatgtgctggcattgctgcacgtcgttgccgac
cataccgataccggagcgttgatgcggttgcttgccactccacggttcggtctttcttcg
gatgacctgaccgcactggcctgcgccgccgaagcgcagaatatggagcaacggttccgg
gctttggtgcaggccggtgtggctcctgctgatacgccgaggtcgcaatggggtgccgtg
gttcgcgaacatcgcgatcaggtggccaatgcagtgtttttgccggatctgctgatgcag
gataattccagtgtgaggttggatcagctcagtgcttacggtagacatgccgtcgaacag
gctgtggaggcactgcgtcaggtgcacgatatggtcggccggtcaatcacagatgtgatt
cgtgcggccatcgaggcgttgaatctcgatatcgataccgtgcttgccggtgctttgcga
gacccgcagcatcgtgtcaatccatcgctggcccgcatgcccatggactccattgtggat
ttggtggacacctatacgcaagagatcgctgttgaacagacgcccacattacgtggattc
atggcatgggtggatcatcttgccactgtggaagacgaggctgccaaactgcctggctct
ccggtggatgtggaattgatgaccgtgcaccaatccaagggattggaatgggatgcggtt
gccgtagtggggcttaatgccggaggatttcccagcaatcagggggatcacctcaaagtc
gtgctggatgacagccatcccggtggcactgaacaaggccaatggacaactcccgaatac
cacgagagcgcggattcgtggttgaccagccctgtggccgtaccggtgcccgtacgagcc
gatgccggaatcctgccgcgattccctcatgacgccgatgtgcatggcgatcccattgac
tcgttgcggaatctcgacgacgtggaactcatcgatgatgaggtgttcggctccatgcgc
gaattcggcgatggcgtggaagaggtggatccgcaaagctggtacctgacccagtccgag
gaatatggccgcagactgcacgctgacgaacgccgtctggcatacgtggcgcttacccgc
gcccgcaacgacgccttgctgacctattgccgctataccggcgaatccagccgcgattgc
acgaacgtgccgaaggggtctcgcgccgcaagtccgtccaacttctggcttgaggtgcat
gacgcgttgcatggccacgaccatgcaatcgaagctcaggcatacgtggaaggtctggga
tccgaagtggcgctggtctcgccccagggtgatcccattgatcctcccgaaggcttcatc
gtgggggagaacgccgaacagtactgtgatgctgtggttggcgacgcatggcgtacgccg
ctggaacagacctccggccggaatgcattgccatggccggcgtcattgggcgaagacacc
gcggaacatctgacccgcggtctcgccttggtgcgtaatgccatcaacggaaagcgcaac
gcaaaagacgacggccacaacccggccggtccattgctgcaacgtgcgcaattgctggtc
gatgacgacgatctcatgaccggcacattggagggtgcggcactcgacagggctgtcaaa
gccaaagcccagcgcattctggctgcgggacgtcagaacgtcaccagcttgcaggcgcgg
gtgggtggtatgagccaacaggaggagcgctcctactggcgcagcgtgatacggcccatc
cctcgcgtgtcctcgccggctgccgaagcgggcacacgcttccacgactgggccgagcgt
ttcatcaatgccggtaagccggatgaggccgcatcgtcggttgattccagcgccgccgaa
atcattaccaccggcaatggcgtatcccgcagcgacctattggccgacctgaacgccatc
gaccaacaatctgtaccggtctgcgaccggaacctcatgatatggcagcagcgtctggcc
tcgtcttcatgggcgcaacgcaccccggtatgggccgaacgctcaatcgtggtggatgtg
ccggaagtcggcatcgtgaacggcaaattggacgcggtgttcctcggcggaatcaatcca
gccgatacctccaaacggtacaccgtggtcgattggaaaaccggtcatcggcctaccaag
ccggatgatgtggagcataaactcgctcagctcgacatgtatcggttactgctcgccgcg
gtcgagggcgtggaattggacagtatcgacgccactctctactatgtcagtgagcccgat
gaaggcttgcgcgagcttcatgcccgcgcgaaaaccaaacaggaaatccttaccgagttg
agctccgggatccccgaacaatctgacaacgactga
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integrated database retrieval system
