Bifidobacterium breve ACS-071-V-Sch8b: HMPREF9228_1397
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Entry
HMPREF9228_1397 CDS
T01844
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bbv
Bifidobacterium breve ACS-071-V-Sch8b
Pathway
bbv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bbv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HMPREF9228_1397 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bbv03021
]
HMPREF9228_1397 (rpoC)
03400 DNA repair and recombination proteins [BR:
bbv03400
]
HMPREF9228_1397 (rpoC)
Enzymes [BR:
bbv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HMPREF9228_1397 (rpoC)
Transcription machinery [BR:
bbv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HMPREF9228_1397 (rpoC)
DNA repair and recombination proteins [BR:
bbv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HMPREF9228_1397 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AEF27433
LinkDB
All DBs
Position
complement(1601510..1605547)
Genome browser
AA seq
1345 aa
AA seq
DB search
MLDVNAFDKLRIGLATADDIRGWSHGEVKKPETINYRTLKPEKDGLFGEQIFGPTRDWEC
ACGKYKRVRFKGIVCERCGVEVTRSRVRRERMGHIELAAPVTHIWFFKGVPSRLGYLLNV
TPKDLERVIYFASYMVTEVNEDERHNDLPGLQDEFDAEIKRLEQRRDTEIEARAKKVEED
LAALEETGEAKGPARAKLRNGAEREMTAIRTRYNDQIARVDAVFDKFKKLKPGDMVDDVD
LWREMQDRYGDYFDGCMGAEAIKKRLQSLDLEAISKELREEIKDASEQRKTKALKRLKVV
NAFLTTGNKPEAMVLDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIE
LGAPEIMLNNEKRMLQEAVDSLFDNGRRGRPVTGASNRPLKSLSDMLKGKQGRFRQNLLG
KRVDYSGRSVIVVGPSLRMHQCGLPKPMALELFKPFVIKRLVDLNYAQNMKSAKRLVDRG
DSEVWGVLEEVISEHPVLLNRAPTLHRLGIQAFEPILVEGKAIHLPPLACAAFNADFDGD
QMAVHLPLSAEAQAEARSLMMASDNILKPADGHTVTMPSQDMILGLYYLSTVLEGAKGQG
RVFSSLEEAEMALDRHEIDMQAKVLIRLPETFVLPKNWEPGEVKVLAPRDGETDTAKEER
FHDGTVLFATSYGRILFNETLPTDYPFVNDQVAKGRLSKIVDDIAMRYSTQQVAATLDAL
KDLGFTRAPWSGVSFAFSDVNEPPERDEKIAEYEAKADKVNANYEMGLLTEEARRQELID
LWTECTSEVSKEVEDKFDPTSNLAIIVQSGARGNMMQINQIAGMRGLVANPKGEIIPRPV
KSNYRDGLSVLEYFISQHGARKGLADTALRTAESGYLTRRLVDVSQDVIVREEDCGTKAG
LPIRVADRDADGNLVLVKAADGGPYSRLLAADVIDPADGKTVLYKRDDALSMDVLNDLVA
HGVEEVKCRSVLTCESKRGVCSKCYGWSLATNKLVDVGETVGIVAAQSIGEPGTQLTLRS
FHSGGVAAASDITQGLPRVTELFEARTPKGEAPITEFAGTIKIVENDRGRQIILSPDADS
GAPTEDGAIKPITYQVSKRVPLKVADGDHIKVGTQLVEGSVDPKKILTILGKRAAQVNIV
EEVHTVYRSQGVDIHDKHIEVIVHQMTRRVTIIDSGDTDLLPGELVDNARFREINRNTVK
NGGKPAVGRPALMGITKASLATDSWLSAASFQETTRVLTEAALSEKVDDLKGLKENVIIG
KLIPAGTGLARYRNAVVEPDKAIRDTIYPNFGLGGDGDLGDTTFSDADLSDLNFSNLEFG
DLKLGDDFNPDDFYSDQGGQGDIEE
NT seq
4038 nt
NT seq
+upstream
nt +downstream
nt
gtgctggacgtcaacgcatttgacaagcttcgtatcggcctggccaccgccgacgatatc
cgcggctggagccacggcgaggtcaagaagcctgaaaccatcaactaccgtactctgaag
ccggagaaggacggtctgttcggtgagcagatcttcggtcctacccgcgattgggagtgc
gcctgcggtaagtacaagcgcgtgcgcttcaagggcatcgtctgcgagcgatgcggcgtt
gaagtgacccgtagccgcgtgcgccgtgagcgcatgggccacatcgagctcgccgctccg
gtgactcacatttggttcttcaagggtgtgccctctcgcctgggctacctgctgaacgtc
accccgaaggatctggagcgcgtcatctacttcgcctcctacatggtcaccgaggtgaac
gaggacgagcgccacaacgatctgcccggtctgcaggacgagttcgatgccgagatcaag
cgtcttgagcagcgtcgtgacaccgagatcgaggctcgagccaagaaggttgaggaggac
ctcgccgctctcgaggagaccggcgaagccaagggcccggctcgtgccaagctgcgcaat
ggtgccgagcgcgagatgactgccatccgcacccgctataacgatcagatcgcccgcgtg
gatgccgtcttcgacaagttcaagaagctcaagcccggcgacatggtcgacgatgtggat
ctgtggcgtgagatgcaggaccgctatggcgattacttcgacggctgcatgggcgccgaa
gctatcaagaagcgtctgcagtccctcgacctcgaagccatttccaaggaactgcgcgaa
gagatcaaggacgcttccgagcagcgcaagaccaaggcgctgaagcgcctcaaggtcgtc
aacgctttcctgaccaccggcaacaagccggaagccatggtgctcgacgtgattccggtc
atcccgccggacctgcgcccgatggtgcagctcgacggtggccgctttgccacctccgat
ctcaacgacctctaccgtcgtgtgatcaaccgtaacaaccgtctgaagcgcctcatcgag
ctcggtgctcctgagatcatgctcaacaacgagaagcgcatgcttcaggaagccgtcgac
tccctgttcgacaacggccgtcgtggtcgcccggtcaccggtgcctccaaccgtccgctc
aagtccctgtccgacatgctcaagggcaagcagggccgcttccgtcagaacctgctcggt
aagcgagtcgactactccggtcgttccgtgatcgtggttggtccgtccctgcgcatgcac
cagtgcggtctgccgaagccgatggctctcgagctgttcaagccgtttgtgatcaagcgt
ctggttgacctcaactacgcacagaacatgaagtccgccaagcgtcttgtggaccgtggc
gactccgaggtgtggggcgtgctcgaggaggtcatctccgagcacccggtgctgctcaac
cgtgcacctacgctgcaccgtctgggtatccaggccttcgagccgattctggtggagggc
aaggccatccacctgccgcctctggcctgcgccgccttcaacgccgacttcgatggtgat
cagatggcagtccacctgccgctgagcgccgaagcccaggctgaggcccgctcgctgatg
atggcttccgacaacatcctgaagccggccgatggccacaccgtgaccatgccttctcag
gacatgatcctcggtctgtactacctgtccaccgtgctggaaggcgccaagggccagggc
cgcgtgttctcctcgctggaagaggccgaaatggccctcgaccgccacgagatcgacatg
caggccaaggtgctcatccgcctgcctgagaccttcgtgctgccgaagaactgggagccc
ggcgaggtcaaggtgctcgccccgcgcgacggcgagaccgacaccgccaaggaagagcgc
ttccacgacggcaccgtgctgttcgccacctcttacggccgtatcctgttcaacgagacc
ctgccgaccgactacccgttcgttaacgatcaggtggccaagggccgcctgtccaagatc
gtcgatgacatcgccatgcgttactccacccagcaggtggccgccacgctggatgccctc
aaggatctcggcttcacccgcgccccttggtccggtgtgtccttcgccttctccgacgtg
aacgagccgccggagcgcgacgagaagatcgccgagtacgaggccaaggccgacaaggtc
aacgccaactacgagatgggtctgttgaccgaggaagcccgccgtcaggagctcattgac
ctgtggaccgagtgcacctccgaggtgtccaaggaagtcgaggacaagttcgacccgacc
tccaacctggccatcatcgtgcagtctggtgcacgaggcaacatgatgcagatcaaccag
attgctggtatgcgaggcctcgtggctaacccgaagggtgagattattcctcgtcctgtg
aagtccaactaccgtgacggcctgtccgtgctggagtacttcatctcccagcacggtgca
cgtaagggtctggctgataccgcactgcgtaccgcagagtctggttatctgacccgtcgt
ctggtcgacgtctcccaggacgtcatcgtgcgcgaagaggactgtggcaccaaggccggt
ctgccgattcgcgtggccgaccgtgacgccgatggcaacctggtgctcgttaaggccgcc
gatggtggtccgtactcccgtctgctcgctgccgatgtcattgacccggctgacggcaag
accgtgctgtacaagcgtgacgatgccctgtccatggacgtgctcaacgacctcgtggcc
catggtgtagaggaagtcaagtgccgttccgtgctgacctgcgagtccaagcgcggtgtg
tgctccaagtgctatggctggtcgctggccaccaacaagctggtcgacgttggcgagacc
gttggtatcgtcgccgcccagtccatcggtgagcctggtacccagctgacgctgcgttcc
ttccactccggtggtgtggctgcggcttccgatatcacccagggtcttccccgtgttacc
gagcttttcgaggctcgtaccccgaagggtgaggccccgattaccgagttcgccggcacc
atcaagattgtggagaacgatcgcggtcgccagatcatcctgagcccggatgctgattcc
ggcgctccgaccgaggacggcgccatcaagccgattacctaccaggtctccaagcgcgtg
ccgctcaaggttgccgatggcgaccacatcaaggttggcacccagctggtcgagggttct
gtggatccgaagaagatcctcaccattctcggcaagcgtgctgctcaggtgaacatcgtg
gaggaagtacacaccgtgtaccgctcccagggtgtggatatccacgacaagcacatcgag
gtcattgtgcaccagatgacccgccgcgtgaccatcatcgactccggcgacaccgatctg
ctgccgggtgagctggtggacaacgcccgcttccgcgagatcaaccgcaataccgtgaag
aacggtggcaagccggctgttggccgtccggcgctgatgggtatcaccaaggcgtctctg
gccaccgattcctggctgtccgccgcctccttccaggagaccacccgcgtgctcaccgaa
gccgcgctctccgagaaggtcgatgacctcaagggcctcaaggagaacgtcatcatcggt
aagctcatcccggccggtacgggtcttgcccgttaccgcaacgctgtggttgagcctgac
aaggccatccgcgacaccatctacccgaacttcggtctgggtggcgatggtgatcttggc
gacacgaccttctctgacgccgacctgtctgacctgaacttctcgaacctcgagttcggc
gatctgaagctcggcgatgacttcaacccggatgatttctattccgatcagggtggtcag
ggcgacatcgaggagtaa
DBGET
integrated database retrieval system
