Bifidobacterium breve ACS-071-V-Sch8b: HMPREF9228_1657
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Entry
HMPREF9228_1657 CDS
T01844
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
bbv
Bifidobacterium breve ACS-071-V-Sch8b
Brite
KEGG Orthology (KO) [BR:
bbv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bbv03016
]
HMPREF9228_1657 (truB)
Enzymes [BR:
bbv01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
HMPREF9228_1657 (truB)
Transfer RNA biogenesis [BR:
bbv03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
HMPREF9228_1657 (truB)
Prokaryotic type
HMPREF9228_1657 (truB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C
TruB_C_2
SAMD1_SHD
PseudoU_synth_2
Motif
Other DBs
NCBI-ProteinID:
AEF26822
LinkDB
All DBs
Position
complement(1902454..1903641)
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AA seq
395 aa
AA seq
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MPKAWIKGTPHMPQTTPSGLLVIDKPQGVTSFDAVAAVRGALHIKKVGHAGTLDPMATGA
LVIAFGHATRLLNAIVAHDKTYVATIRLGLRTTTDDAEGEVLVDDEVRSRWLELSSQLTE
GGHSEEPSSLPASSWQQLLTRTIAANFTGDIEQIPNTFSAIKINGQRAYDLAREGKDVEL
KPRPVTISEFTVLAIRSGFVTRKQSDEALQERGMVSVLDVDVRVSCSSGTYIRALARDLG
DKLGVGGYLTRLRRTRVGNFALPDDTSGLLSPDAVSETQTHTVTAHTEQKTFTNREGETI
TRNKCVLDTLEGLDGAGRCAWLIGRSLTMEQAARSAMPALDITPEEAAELRFGRRIERTI
HEPAAAIVPQTHDVVAIIEKANGHQAKPITVFPLA
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaggcatggataaagggaacaccgcatatgcctcaaacaactccaagcggcctg
ctcgtcatcgacaagccgcaaggcgtgaccagtttcgatgcagtggccgccgtgcgcggc
gcgttgcatatcaagaaagtcggtcacgccggcacacttgatccgatggccaccggagcg
ttggtcatcgcattcggccatgccacgcgtctgctcaatgccatcgttgcacatgataaa
acctatgtggccaccattcgtctcggcttgcgcaccaccaccgacgatgccgaaggcgag
gtgcttgtcgatgacgaagtccgctcccgctggctggaactgtcgtcgcagctgactgaa
ggtggtcatagcgaggaaccatcatcattgccagcctcctcgtggcagcagctactcact
cgtactatcgccgccaacttcaccggcgatatcgagcaaattcccaacactttttccgcc
atcaaaatcaatggtcagcgggcttatgacttggcccgcgaaggcaaggatgtggagctt
aagccacgtccggtcactatcagcgaattcactgtgctggctattcgcagtggattcgtg
acgaggaagcagtctgatgaagcgttgcaagagcgcggaatggtttcagtattggacgtc
gatgtacgcgtcagctgctcgtcgggtacgtatattcgcgcattggcccgtgacttgggc
gacaagttgggtgtcggtggttatctgacccgtttgcgccgcaccagagtcggcaacttc
gccctgccggacgacaccagcgggcttctttcgcctgatgcggtgagtgagacgcagacc
catacggtcacggctcataccgagcagaaaacgtttaccaatcgcgaaggcgaaaccatc
actcgcaataagtgcgtgctcgacaccctggaagggcttgacggcgctggtcgatgcgca
tggctgattggtcgctcattgaccatggaacaggccgcccgcagcgccatgcccgctctt
gacatcacgccggaggaagctgcggagctgcgttttggacgtcgcatcgagcgcacgatt
catgagcctgccgccgccatcgtgccgcaaacccatgatgtggtggccatcatcgagaag
gcgaatggccatcaggccaagccgattaccgtattccccctcgcgtaa
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