Bifidobacterium breve ACS-071-V-Sch8b: HMPREF9228_1816
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Entry
HMPREF9228_1816 CDS
T01844
Name
(GenBank) S1 RNA binding domain protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bbv
Bifidobacterium breve ACS-071-V-Sch8b
Pathway
bbv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMPREF9228_1816
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbv03019
]
HMPREF9228_1816
03009 Ribosome biogenesis [BR:
bbv03009
]
HMPREF9228_1816
Enzymes [BR:
bbv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HMPREF9228_1816
Messenger RNA biogenesis [BR:
bbv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HMPREF9228_1816
Ribosome biogenesis [BR:
bbv03009
]
Prokaryotic type
rRNA processing factors
HMPREF9228_1816
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Actin_micro
Motif
Other DBs
NCBI-ProteinID:
AEF27278
LinkDB
All DBs
Position
complement(2060233..2063304)
Genome browser
AA seq
1023 aa
AA seq
DB search
MPTENREGFVGDETDNSTVSNTESQASGASEPNAEASQPTRRRRGGRRVVRGTGAAGASL
ELQVQEHAAPLFEAPALPDADASASAETTDNNASDDEKHPARRTRSRRSADNADYEDRST
RRRAVADDDDAPRPVRRRRAVSDDLEEDDERPIRRRRVASDDFDEDNDRLVRRRRSVIDD
LEDDDAPRSSRRRTAVDDSDEDGDRPVRRRRSTTNDRDDRDDEPRSARRTRSRRSSEDAR
EENPDERVLDVIDALPAGHESARRGKPMTSLLFQEPVLPDMRRDDRDDEEDDGEQRSRSS
RRSRAREDEADYEERPSRSRRSNRSDHGDHDDRDDHDDRDDSRNNRRRNEAQDDFDADDQ
SDSRRSRRSRRLNAQERRAAAEVEQIEEDLELDDITYSPIAEEENDEESDSTRTRSRRRR
RRGSRNESGASNNDSESSENNGDDSRRRRDDRDERDRDDDEEQTVTRRRRRRRGGKNAES
GDEQDDQQLTRRSRKQQYIDEITDVEGSTRLEAKKQRRRDNRRERSRQSQLMEQDFLARR
ENVDRLMVVREKEHHTQISVVEDNILVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFV
DIGQARNGVLYAGEVNWDAARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVT
LAGRFLVLVPSGGMTGVSRKLSERERSRLKGIVSKIAPKDMGVIIRTAAEGASEEAIVKD
LESLVRQWERINAKREEFWHGKRPKLLQGEPDVAIRVVRDIFNDDFGKLIVEGDKVYDRI
EEYLDTMAPDLKDKLEKWDPAEHEGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTE
AMTTIDVNTGRFIGKGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANR
DLVLRRLVECLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHD
QPTVSADYDDPYALRGGDPFVKTNKHGRGTAPAPEPAGSSADVKAKLAQIAAAAVAANNT
EEE
NT seq
3072 nt
NT seq
+upstream
nt +downstream
nt
gtgcccactgagaaccgtgaaggtttcgtcggtgacgaaaccgataactcaaccgtatcc
aataccgaatcacaggcttcgggagcttccgagccgaacgccgaagcatcgcagccgact
cgccgccgtcgcggtggccgtcgtgtagtgcgtggcaccggtgctgccggcgcatccctt
gagctgcaagtccaggaacacgccgccccgctgtttgaggcacccgctttgcctgatgcc
gatgcgtccgcttccgccgaaactaccgacaataacgcctccgatgatgaaaagcacccg
gcgcgccgcacccgtagccgccgctctgccgataatgccgattatgaggaccgttcgact
cggcgtcgtgctgtggctgatgacgatgatgcgccgcgtccggtccgccgtcgtcgcgcg
gtgtccgatgatctcgaggaagacgatgagcgtccgattcgccgtcgtcgcgttgcatcc
gatgattttgatgaagataacgatcgtctggtgcgtcgccgtcgctctgtgattgacgat
ctcgaagatgatgatgcgccgcgttcatctcgccgccgtactgcggtcgacgactccgat
gaggatggcgatcgtccggtgcgtcgccgtcgttccactacgaatgaccgcgatgaccgc
gatgacgagccccgctcggcccgtcgtactcgcagccgccgttcttcggaagacgcgcgc
gaagaaaaccccgatgagcgcgtgctggatgtgattgatgcgctgcctgcagggcatgaa
tccgcccgtcgtggcaagccgatgacttccctgctgttccaagagccggtgctcccggac
atgcgacgtgatgatcgtgatgatgaggaagatgatggcgaacagcgttcccgctcttct
cgtcgctcccgcgcccgtgaggatgaggccgattacgaggaacgcccgtctcgttcccgc
cggtcgaaccgcagcgatcacggcgatcatgatgaccgcgatgatcacgatgaccgcgat
gacagccgcaataaccgtcgccggaatgaggctcaggatgatttcgacgctgatgaccag
tccgattctcgccgttctcgccgttctcgccgcctgaacgcccaggagcgccgtgctgcc
gccgaagtcgagcagattgaggaagacctcgagctggatgacattacgtactcgccgatt
gctgaagaggagaacgacgaagagtccgactccacccgcacccgttcccgccgtcgccgt
cgccgtggctcccgcaacgagtccggtgcttccaacaacgacagcgagtcctccgagaac
aatggtgacgattcccgtcgccgtcgcgatgatcgcgatgagcgcgaccgtgatgatgac
gaggagcagaccgttacccgccgtcgccgtcgccgccgcggaggcaagaatgccgagagc
ggtgatgagcaggacgatcagcagctgactcgccgctcccgcaagcagcagtacatcgat
gagatcaccgatgtggaaggctccacccgtcttgaggccaagaaacagcgacgccgtgac
aatcgtcgtgagcgtagtcgccagagccagctcatggagcaggatttcctcgcacgccgt
gagaacgtcgatcgcctcatggtggtgcgcgagaaggaacatcacacccagatttccgtg
gtggaagacaacatcctggtcgagcattacgtctccgacatccaggaagtgcagaccgtg
ggcaacatctacctcggccgtgtacagaacgtgctgcccagcatggaagccgctttcgtg
gacatcggccaggcccgtaacggcgtgctctacgccggtgaggtcaactgggacgccgcg
cgtctcgaaggccagccgcgccgcatcgagttggcgttcaagtccggcgacccggtgctc
gtgcaggtcaccaaggatccgatcggacacaagggagcccgcctgacttctcaggtcacg
ctcgccggccgcttcctggtgctcgtgccgtccggcggcatgaccggcgtgagccgcaag
ctctccgaacgcgaacgtagccggctcaagggcatcgtctccaagatcgccccgaaggat
atgggtgtcatcatccgtaccgcagccgagggcgcctccgaggaagccatcgtcaaggat
cttgagtctttggttcgccagtgggagcgcatcaacgccaagcgtgaggaattctggcat
ggcaagcgcccgaagctcctgcagggcgagcccgatgtggctatccgtgtggtgcgcgac
atcttcaacgatgacttcggcaagctcatcgtcgaaggcgacaaggtctacgaccgtatc
gaggagtatctcgacaccatggcccccgacttgaaggataagctggagaagtgggacccg
gccgagcatgagggcaaggacgtgttcgacaagtggcagatcgactcccagctcagaaag
ggcatggagcgtcaggtctacctgccgtctggtggttcgatcgtcatcgaccgcactgaa
gccatgaccaccattgatgtgaacaccggccgcttcattggcaagggcaagtcccttgag
gagacggtgacgcgttgcaatttggaggcctctgaggaaattgcacgtcagctgcgactg
cgcgacatcggcggcatggtgatgattgactatgtggatatggtcatgcccgctaaccgt
gacttggtgctgcgccgtctagtcgaatgcctggcgcgcgaccggaccaagcatcaggtg
gccgaggtcacctcgcttggtctggtgcagatgacccgtaagcgcatcggtcagggcttg
gtcgaggcgttctccgaggaatgcccgacttgcaagggtcgtggctttatcctgcacgat
cagccgactgtttccgccgactacgatgacccgtacgcattgcgcggcggtgatccgttc
gtcaagaccaacaagcatggtcgaggcactgccccagctccggaaccggccggctccagc
gctgatgtcaaggccaaactggcccagattgcagctgctgccgtggccgccaacaacacc
gaggaggagtag
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integrated database retrieval system
