Bdellovibrio bacteriovorus W: BDW_04795
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Entry
BDW_04795 CDS
T03036
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bbw
Bdellovibrio bacteriovorus W
Pathway
bbw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BDW_04795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbw03019
]
BDW_04795
03009 Ribosome biogenesis [BR:
bbw03009
]
BDW_04795
Enzymes [BR:
bbw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BDW_04795
Messenger RNA biogenesis [BR:
bbw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BDW_04795
Ribosome biogenesis [BR:
bbw03009
]
Prokaryotic type
rRNA helicases
BDW_04795
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
CMS1
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
AHI05467
LinkDB
All DBs
Position
complement(998345..1000192)
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AA seq
615 aa
AA seq
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MAPLTTVDSFESFGLSAPLLAAMQDMGFSTPTPIQRQALPLLLTGAQDFIGLASTGTGKT
AAFGIPLIENIDPTIKDTQALVMSPTRELALQVAEQLTLLGKKKGVRVVTIYGGSSYRTQ
IDGIKRGAHIVVATPGRLVDFIEQRIIKLQNVKTVVLDEADEMLSMGFKEDMETILRATQ
PDEETDSQRAACRTWLFSATMSPEVKRLSSTYLENPETVQVNKVGAADTIEQVYYTVKNS
SKTEVIGRLLQTLPEFYGIIFCQTKMEVAELADILTQRGFPADSLHGDKNQQEREATMKK
FKSRSVKIVVATDVAARGLDIKDLTHVINHSLPWDVESYVHRIGRTGRNGQKGVAITLVN
PEQLNLLRRVMITAKATLTKGVVPSANEVAGLKIKDVLDKVTTMDASSAPVQSAMDLIMD
LTHAEEIDFKELTKEELLARFIVAYFPNVFVKKDMILDYMGDKVPRELLPRDPQDNRFSR
GRSEGRGGSRGDRGPRDFNGGGRRERSDRGGRGFGRSSDRPEGGGYKARTSSDRPEGGGY
KARSTSSDRPEGGGYKARSFDRPERSERADRPERSERPERSERSERSSRPPLRSEERRDH
SGIKRVRSPKRHFRD
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atggctccattaacaactgtcgattcgttcgaaagctttggtctgagcgcgcccctattg
gccgctatgcaggacatgggcttctcgacgcccacgcctattcaacgccaagctttacct
cttcttcttacaggagcccaagactttatcggtcttgcttcgacaggaacgggaaagaca
gcagcgtttggtattcctcttatcgaaaacattgatccgacgatcaaggacactcaggct
ctagttatgagcccgactcgtgaacttgctcttcaagtagcagaacaactgactcttctt
gggaagaaaaaaggtgttcgcgttgtcactatttacggtggttctagctaccgcacacaa
attgacggcattaaaagaggcgctcacattgttgtagcaactccgggtcgtcttgtagac
ttcatcgaacaaagaatcatcaagcttcaaaatgttaaaacagtggttttagacgaggca
gatgaaatgctttctatgggctttaaagaagacatggaaacaattcttcgcgccactcaa
ccagatgaagaaactgactctcaaagagcggcctgcagaacatggttattctctgcaaca
atgagccctgaggtaaaacgtctttcttcgacttacctggaaaatccagaaactgtacaa
gttaataaagtaggcgctgctgatactatcgagcaagtttactacacagttaaaaactct
tctaaaacagaagtcattggccgccttcttcaaactcttcctgagttctacggtatcatc
ttctgtcaaacgaagatggaagtggctgaacttgcagatattttaactcaaagaggcttc
ccggctgactctcttcatggagataaaaatcagcaagagcgtgaagctacaatgaaaaaa
ttcaaatctcgttctgtgaagattgtagtagcgacggacgttgctgctcgtggtttggat
attaaagatcttactcacgtgatcaatcactctctaccatgggatgttgagtcctatgtt
caccgtatcggccgtacgggtcgtaacgggcaaaaaggtgttgccatcactttggtaaat
ccggagcaattgaatcttcttcgccgcgtgatgatcactgcgaaagcaacccttactaaa
ggtgttgttccatctgcgaatgaagtggctggtctaaaaattaaagacgttttagataaa
gtgacaacaatggatgcttcttcagctccggttcaatctgcaatggatttgatcatggat
ttaactcacgctgaagagatcgactttaaagagcttactaaagaagaacttctagctcgc
tttatcgtggcttacttcccgaatgtcttcgttaagaaagacatgatcttagattacatg
ggtgacaaagttcctcgcgagcttcttccacgtgatcctcaagacaatcgtttctcaaga
ggtcgctctgaaggtcgcggtggcagcagaggcgatagaggtccaagagacttcaacggc
ggtggacgccgtgagagaagtgatcgcggtggccgtggttttggtcgctcatctgatcgc
cctgaaggcggaggctataaagctcgcacttcttctgaccgccctgaggggggtggatat
aaagctcgtagcacttcttccgaccgccctgaaggtggtggatataaagcgcgcagcttt
gatcgtccagaacgcagtgaaagagcggatcgcccagaacgttcagagagacctgagcgc
tcagagcgtagcgagagaagctcaagaccacctcttcgttctgaagaacgtcgtgatcac
agcggaattaaacgtgtgcgcagccctaaaaggcatttccgcgattaa
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