Bdellovibrio bacteriovorus W: BDW_11000
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Entry
BDW_11000 CDS
T03036
Name
(GenBank) DNA-directed RNA polymerase beta chain
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bbw
Bdellovibrio bacteriovorus W
Pathway
bbw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bbw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BDW_11000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bbw03021
]
BDW_11000
03400 DNA repair and recombination proteins [BR:
bbw03400
]
BDW_11000
Enzymes [BR:
bbw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BDW_11000
Transcription machinery [BR:
bbw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BDW_11000
DNA repair and recombination proteins [BR:
bbw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BDW_11000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AHI06700
LinkDB
All DBs
Position
complement(2317464..2321666)
Genome browser
AA seq
1400 aa
AA seq
DB search
MDRTPITASNIRVRKSFAKNKQVIDIPNLIELQKSSYEAFIQKDVDPDRRGEAGLNGVFK
SVFPISDFNNTASLEFVSYTLEPAKYDVDECRQRGMTFAAPIKVTLRLIVFDVDEETEAR
SIRDVKEQEVYLGEIPLMTANGSFIINGTERVVVSQLHRSPGVFFDHDGGKNNASGKLIY
SARVIPYRGSWLDAEFDQKDLIHVRIDRRRKFPVTILLKALGYNAEQLLEYFYDLDEVYA
RDGKLYRKLDIERMSGQRALNDIVDPASGEALVKAGRRITRAIVKKIKDLNITELEVQPE
DLDSKVLAKPLIDESTGEIIADANAELNTAIIARAIEAGIDRFFMIFFDGLTVGPYLRNT
LLVDKVSNKEESLIEIYKRLRPGEPPTLDAATAFFNRLFFDPESYDLSEVGRIKINHRFG
ISMEECPPSHRTLTHKDILSTMKTLIDLKNGRGVIDDIDHLGNRRVRSVGELLENQYRIG
LVRMERAIRERMSLQDVETMMPHDLVNAKPVNAVVKEFFGSSQLSQFMDQTNPLSEITHK
RRLSALGPGGLTRDRAGFEVRDVHPTHYGRICPIETPEGPNIGLIASLATYARINNYGFI
ETPYRKVDQGAVSKDISYLSALEEAGHYIAPAPRDEAGSKEIQTATTITRVDGEYEIVDK
DKVALMDVSPSQLVSIAASLIPFLEHDDANRALMGSNMQRQAVPLLRSRAPLVGTGVERL
VARDSGTSVVAMNDGIVEEVDASRIVIRRFAKGGELGANVDIYNLTKYQRTNQNTCFNQK
PIVSVGDKVSKGDIVADGPSTELGELALGQNILVAFTPWQGYNFEDSILISERLLKDDVY
TSIHIEEFECVARDTKLGKEEITRDIANVGEEALKDLDSSGIIRIGAEVRPGYILVGKVT
PKGETQLSPEEKLLRAIFGEKAGDVRDTSLRAPSGVYGTVIDAQVYSREGADRDERLASI
IEDKKRKLEKDLAVEQNVIKNNSISKLRDILVGKVTTGVLLNEDGSQKLLNKGQDITEAD
LETIPFELLNYIPLEQELEFQVNKIIDNARNQLDAVKLVFNEKIDRLRKGDELPPGVIKM
VKVYVAIKRKMQVGDKFAGRHGNKGVISKVLPVEDMPYLADGTPVDMVLNPLGVPSRMNI
GQILEVHLGWAAHNLGKQLGEYLDKWNAENARNDMKSIFNDNEISAKLDKADDASLKKIV
KSMKDGIHVGTPVFDGAREVDVKGLLEKADVNTSGKSVLFDGRSGEPFTNPVTVGIMYML
KLHHLVEEKIHARSIGPYSLVSQQPLGGKAQFGGQRLGEMEVWAIEAYGAAYSLQEFLTV
KSDDVAGRTRMYESIVKGENILEPGLPESFNVLVKELQSLALNVELMESDILRDSDEDMM
EDVLEMEANPVSSNDGSEQH
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atggatagaactccgattacggcttctaacattcgagttagaaagtcatttgcgaaaaac
aagcaggtcattgatataccaaatctgattgaattgcagaaaagctcttacgaagctttc
attcaaaaagatgtcgatccagatcgccgtggcgaagctggtttgaatggtgttttcaaa
tctgttttccctatttcagatttcaacaatacagcgagcttagagtttgttagctacact
cttgagccagcgaagtatgacgttgatgagtgccgccaacgtggaatgacgttcgcagct
ccaatcaaagtcactcttcgtttgatcgtgtttgatgttgatgaagagactgaagcgcgc
agcattcgtgacgttaaagagcaagaagtttatctaggtgaaattcctttgatgactgca
aacggttctttcatcatcaatggtactgagcgtgttgttgtttctcagttgcacagatct
ccaggtgtattctttgaccacgatggtggtaagaataacgcttctggtaagttgatctac
tctgcacgtgtgattccttaccgtggatcatggttagatgctgagtttgaccaaaaagat
cttatccacgttcgtatcgatcgtcgtcgtaagttcccagtaacaattcttcttaaagct
cttggctacaacgctgaacagcttcttgagtacttctacgaccttgatgaagtttacgct
cgtgacggtaagctttaccgcaaacttgatatcgaaagaatgtcaggtcaaagagcattg
aacgatatcgttgatcctgcatctggcgaagcgctagtaaaagcaggtcgtcgtataact
cgtgcgatcgttaagaaaattaaagatctaaacatcactgagcttgaagttcagcctgag
gatttagattctaaagttcttgctaagccgcttattgatgaatcaactggtgagatcatt
gctgatgcgaacgcagagttaaacactgcaattatcgctcgtgcaattgaagcgggtatt
gaccgtttcttcatgatcttcttcgatggtttgactgtaggtccttaccttcgcaatacg
ttgttagttgataaagtttctaacaaagaagaatcacttatcgaaatctacaaaagactt
cgtcctggtgagcctccaacgcttgatgctgcaactgcattcttcaatcgtctattcttc
gatccagagagctatgacctttctgaagttggtcgtattaagatcaaccacagattcggt
atctctatggaagagtgccctccttcacacagaacgctgactcataaagatatcttgagc
actatgaaaactctgatcgaccttaagaacggtcgcggtgttatcgacgatatcgatcac
ttgggtaaccgtcgtgttcgttcagtgggtgagcttctagagaatcaataccgtatcggt
cttgttcgtatggagcgcgctattcgtgagcgcatgtctcttcaagatgttgagacaatg
atgccgcacgacctagtgaacgctaagccagtgaacgcagttgttaaagaattctttggt
tcttctcaattgtctcagttcatggatcaaacaaatcctctttcagaaattacccacaag
cgtcgtctttctgcattgggacctggtggtttgactcgtgatagagcgggcttcgaagtg
cgtgacgtacatccaacgcattacggacgtatctgtccaattgaaactccagagggacca
aacatcggtcttatcgcatctctagcgacttatgctcgcatcaacaactacggtttcatc
gagactccgtacagaaaagttgatcaaggcgcagtttctaaagatatcagctacctttca
gctcttgaagaagcaggtcactacattgcaccagcgccaagagacgaagcgggcagtaaa
gagattcaaactgcaacaacgatcactcgcgtagatggtgagtacgaaatcgttgataaa
gataaagttgctttgatggacgtttctccttctcagctagtatctattgcagcttctttg
attccgttcctagagcatgacgatgccaaccgtgccctgatgggttcgaacatgcaacgt
caagcggttccgttgttgagatctcgcgctccacttgttggaacaggcgttgagcgtctt
gtagcacgtgactctggtacatctgttgtagcaatgaatgatggtatcgttgaagaagta
gatgcttctcgtattgttattcgtcgttttgcaaaaggtggcgagctaggtgcaaacgta
gatatctacaacctaacgaagtaccaacgtacgaatcaaaatacgtgcttcaaccagaag
cctatcgtgagtgttggtgataaggtttctaaaggcgacatcgttgctgacggaccttct
actgagcttggagagttagcattaggacaaaacatcctagtcgcgttcactccatggcaa
ggttacaacttcgaggactctatcttaatttctgaacgtctactaaaagatgacgtttac
acttcaatccacatcgaagagttcgagtgtgtggcgcgtgatacgaaacttggaaaagaa
gagatcactcgcgatatcgcgaacgttggtgaggaagctcttaaagacctagatagctca
ggtatcatccgcatcggtgcggaagttcgccctggttatatcttggttggtaaagtcact
ccaaaaggtgaaacgcaactttctcctgaggaaaaacttctaagagcgatcttcggtgaa
aaagcaggggacgtacgtgatacttctcttcgcgcaccatcgggcgtttacggaacagtt
atcgacgcgcaagtttactcgcgtgaaggtgctgatcgtgacgagcgtttggcttctatc
atcgaagataaaaaacgcaagctagagaaagacttagctgtagagcaaaacgttatcaaa
aataactctatctctaagcttcgtgacatccttgttggcaaagtgactactggcgttctt
ctaaatgaagatggaagccaaaagcttctaaataaaggccaagacatcactgaggcggat
ctagagacaattccatttgaattgttgaactatatccctcttgaacaagagcttgagttc
caagttaataaaattatcgacaatgcacgtaaccaacttgatgctgttaaacttgtgttt
aacgagaagattgatcgcctacgtaaaggtgacgagcttcctcctggcgttatcaaaatg
gttaaagtttacgttgctatcaaacgtaagatgcaagtgggtgacaagttcgctggacgt
cacggtaataaaggtgtgatctctaaggttcttcctgtcgaagacatgccataccttgct
gacggtactccagttgacatggttctaaatccactgggcgttccttctcgtatgaacatc
gggcaaattcttgaggttcacttgggttgggcagctcataatttaggtaagcaattaggt
gagtacctagataagtggaatgcagaaaatgctcgtaacgatatgaagagtatcttcaac
gacaacgagatctctgcaaaacttgacaaagctgatgatgcttcattgaagaaaatcgta
aaatcaatgaaagacggtattcacgttggcacacctgtgttcgacggagctcgtgaagtt
gatgtgaaaggtcttcttgaaaaagcagacgtgaacacatcaggtaaatcagttctattt
gatggtagatctggtgagccgttcacgaacccagttactgtgggcatcatgtacatgctt
aagcttcaccatctagtggaagagaaaatccacgctcgttctattggaccttactctcta
gtttctcaacaacctctgggtggtaaagctcagttcggtggtcagcgtctaggagagatg
gaggtttgggcgatcgaggcatacggtgctgcgtactctctacaagaattcttaacagtg
aagtcagatgacgttgctggaagaactcgtatgtatgaaagcattgtaaaaggtgaaaat
attcttgagccaggtcttcctgagtccttcaacgtattggtgaaagagcttcagtctctt
gcattgaacgttgagcttatggagtccgacatccttcgcgattctgatgaagatatgatg
gaagatgtccttgagatggaagcaaacccagtatcgtcaaacgacggttctgagcagcac
taa
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