Bordetella bronchiseptica S798: BBS798_3233
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Entry
BBS798_3233 CDS
T03637
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bbx
Bordetella bronchiseptica S798
Pathway
bbx03030
DNA replication
bbx03430
Mismatch repair
bbx03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bbx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BBS798_3233 (dnaE)
03430 Mismatch repair
BBS798_3233 (dnaE)
03440 Homologous recombination
BBS798_3233 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bbx03032
]
BBS798_3233 (dnaE)
03400 DNA repair and recombination proteins [BR:
bbx03400
]
BBS798_3233 (dnaE)
Enzymes [BR:
bbx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BBS798_3233 (dnaE)
DNA replication proteins [BR:
bbx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BBS798_3233 (dnaE)
DNA repair and recombination proteins [BR:
bbx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BBS798_3233 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
BAO69958
LinkDB
All DBs
Position
complement(3527635..3531126)
Genome browser
AA seq
1163 aa
AA seq
DB search
MSEAVTNPPPFVHLRVHSEFSVSDGIVRISDLIKRVAKLGQPAVALTDLSNIFGLIKFYK
GARGAGVKPVAGSDVWLTNDDDREKPFRLLLLVRNHQGYLNLCELLTRSFLENQYKGRAE
VRREWLQGQEGLIVLSGARGGDVGQALEAGNAVTALSLARQWGQLFPGSYYIELQRAGFD
GDETYTQAAMRLAAEAGLPVVATHPVQFLDRDEFQAHEARVCIAEGEILANPRRVRRYTQ
DQYLLSSEEMARRFADVPSALANTVEIARRCNLTLVLGKPRLPNFPTPDGVTLDDYLVQL
SEEGLEKRLQFLFPDEAERNAKRDQYYERLRWECKTIIQMGFPGYFLIVQDFINWGKNNG
VPVGPGRGSGAGSLVAYALGITDLDPIRYDLLFERFLNPERVSMPDFDIDFCQDNRERVI
DYVKMKYGREAVSQIATFGTLGAKAVVRDAGRVLDMPYLFCDALSKLIPFNPADPWTLER
TLKDEPAFKDRYEQEEEVRALVDLARPLEGLTRSIGMHAGGVLIAPGKLTDFCPLYCQPG
QENSAVSQFDKDDVEAAGLVKFDFLGLRNLTILDWAVRFVRQFNADKRDFDVMALSLDDQ
AAYKVLCDANTTAVFQLESRGMKELLKKLRPSTFEDIIAMLALYRPGPLESGMVDDFVNR
KHGRAAVDYFHPDLEGTLRSTYGVIVYQEQVMLISQIIGGYSLGGADLLRRAMGKKKPEE
MAKHRELFEQGAREKGHDPDLAVKLFDLMEKFAGYGFNKSHSAAYALIAYQTAWLKAYHP
TEFLAATLSSDMDDTDKVQIFVRDAQDNGVEVLPPDVNASGYRFEPVADKHTEQGKPPRT
MRYGLGAVKGTGQGAVEEILRARQEGGPFANLFDFCRRVSKHAVNRRTIEALIKAGAFDT
IEPNRAAMLASVGTAMEAAEQAARSANQSSLFGDDSGDVVAGELTKVAPWNLHTTLTEEK
TALGYYFSGHLFDAWRDEVRRIVPMQLARLEPQRDLQWMCGVLAGVRTMMTRRGKMVFAV
LDDGTAQIEISVFNELYEKHRGRLREDQLLVVQGKVSNDEYSGGMRIVAEQLYDLQLARE
ARAKSLRIRLNGQADAARLRQLLNPFRAEPENGVPGVPVDVVYRRNNFLCTVRLGEDWRV
RMADTLLENLNDWAKPDGVEVTY
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaagccgtaacaaacccgcccccatttgtacatttgcgcgtccattccgagttc
tccgtctcggatggcatcgtgcgcatctccgatctgatcaagcgcgtggccaagctgggc
cagccggccgtggcgctgacagacctgtcgaacatcttcggcctgatcaagttctacaag
ggcgcgcgcggcgccggggtcaagccggtggccggcagcgatgtctggctgaccaacgac
gatgaccgcgaaaagccgttccgtctcctgctgctggtgcgcaaccaccagggctacctc
aacctgtgcgagctgctgacgcgctcgttcctggagaatcagtacaaggggcgcgccgag
gtgcgccgcgaatggctgcagggccaggaagggctgatcgtgctgtcgggcgcgcgcggc
ggcgacgtcggccaggcgctggaagccggcaatgccgtcacggcgctgtcgctggcgcgc
cagtggggccagctgtttccgggttcgtactacatcgaattgcagcgcgccggcttcgac
ggcgacgaaacctatacccaggccgccatgcggctggccgccgaggcggggctgccggtg
gtggccacccatccggtgcagttcttggaccgcgacgagttccaggcgcacgaggcgcgc
gtgtgcatcgccgaaggcgagatcctcgccaatccgcggcgggtgcggcgctacacgcag
gaccaatacctgctcagttccgaggaaatggcgcgccgcttcgccgacgtgccctcggcg
ctggccaatacggtcgagatcgcgcggcgctgcaacctgaccctggtgctgggcaagccg
cgcctgccgaacttccccacgccggacggcgtgacgctggacgactacctggtccagctg
tccgaggaaggcctggaaaagcgcctgcagttcctgttccccgacgaggccgagcgcaac
gccaagcgcgaccagtactacgaacgcctgcgctgggagtgcaagaccatcatccagatg
ggctttcccggctacttcctgatcgtgcaggacttcatcaactggggcaagaacaacggc
gttccggtcgggccggggcggggctcgggcgccggctcgctggtggcctacgcgctgggc
attaccgacctggatccgatccgctacgacttgctgttcgagcgcttcctgaatccggag
cgggtgtcgatgcctgacttcgatatcgacttctgccaggacaaccgcgaacgggtcatc
gactacgtcaagatgaagtacgggcgcgaggcggtcagccagatcgccaccttcggcacc
ttgggcgccaaggcggtggtgcgcgacgccggccgcgtgctggacatgccctacctgttc
tgcgatgccctgtccaagctgatcccgttcaacccggccgacccgtggacgctggagcgc
acgctcaaggacgagccggccttcaaggaccgctacgagcaggaagaggaagtgcgcgcc
ctggtcgacctggcgcgcccgctcgaaggcctgacgcgcagcatcggtatgcacgccggc
ggggtgctcatcgcgccgggcaagctgaccgatttctgcccgctgtattgccagcccggc
caggagaacagcgcggtctcccagttcgacaaggacgacgtcgaggcggccggcctggtg
aagttcgacttcctgggcctgcgcaacctgaccatcctggactgggcggtgcgcttcgtg
cgccagttcaatgccgacaagcgcgacttcgacgtcatggccctgtcgctggacgaccag
gccgcgtacaaggtgctgtgcgacgccaacacgaccgcggtgttccagcttgaatcgcgc
ggcatgaaagagctgctcaagaagctgcgccccagcactttcgaagacatcatcgccatg
ctggccctgtaccggccggggccgctcgaatccggcatggtggacgatttcgtcaaccgc
aagcacggccgcgccgcggtcgattatttccacccggacctggaaggcaccctgcgcagc
acgtacggggtcatcgtctaccaggaacaggtgatgctgatctcgcagatcatcggcggc
tactcgctgggcggcgccgacctgctgcggcgcgccatgggcaagaaaaagcccgaggaa
atggccaagcaccgcgaactgttcgagcagggcgcgcgcgagaaggggcatgatcccgac
ctggcggtcaagctgttcgacctgatggagaagttcgcgggctacggcttcaacaagtcg
cactcggccgcctatgcgctgatcgcctaccagaccgcatggctgaaggcctaccatccc
accgagttcctggccgccacgctgtcgtccgacatggacgataccgacaaggtgcagatc
ttcgtgcgcgacgcccaggacaacggcgtcgaggtgctgccgcccgatgtcaacgcctcg
ggctatcgcttcgaaccggtggcggacaagcacaccgagcagggcaaaccgccgcgcacc
atgcgctacggcctgggcgcggtcaaaggcaccgggcagggcgcggtcgaggaaatcctg
cgcgcgcgccaggagggcggcccgttcgccaatctgttcgacttctgccgccgcgtcagc
aagcacgcggtcaaccggcgcaccatcgaggccctgatcaaggccggcgcgttcgatacc
atcgaacccaaccgcgccgccatgctggcctcggtcggtacggcgatggaggcggccgag
caggccgcgcgcagcgccaaccagtcgtcgctgttcggcgacgacagcggcgacgtggtc
gccggcgagctgaccaaggtcgcgccctggaacctgcacaccacgctgaccgaggaaaag
acggcgctgggctattacttcagcggccacctgttcgacgcctggcgcgacgaggtgcgc
cgcatcgtgcccatgcagctggcgcgcctggagccgcagcgcgacctgcaatggatgtgc
ggggtgctggccggcgtgcgcaccatgatgacgcggcgcggcaagatggtgttcgccgtg
ctcgacgacggcacggcgcagatcgagatctcggtgttcaacgagctgtacgagaagcac
cgcggccgcctgcgcgaagaccagttgctggtggtgcagggcaaggtcagcaacgacgag
tactccggcggcatgcgcatcgtggccgagcagctgtacgacctgcagctggcgcgcgag
gcgcgcgccaagtcgctgcgcatccggctcaacggccaggccgacgcggcgcgcctgcgc
cagctgctcaacccgttccgggccgagcccgagaacggcgtgcccggcgtgccggtcgac
gtggtctaccgcaggaacaatttcctgtgcacggtgcggctgggcgaagactggcgcgtg
cgcatggccgacacgctgctcgagaacctgaacgactgggccaagcccgacggcgtcgag
gtcacctactga
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integrated database retrieval system
