Bacillus bombysepticus: CY96_26855
Help
Entry
CY96_26855 CDS
T03597
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bby
Bacillus bombysepticus
Pathway
bby03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bby00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CY96_26855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bby03400
]
CY96_26855
Enzymes [BR:
bby01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CY96_26855
DNA repair and recombination proteins [BR:
bby03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CY96_26855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
UB2H
RecG_dom3_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AHX21469
UniProt:
A0A9W3L0B8
LinkDB
All DBs
Position
5199125..5202655
Genome browser
AA seq
1176 aa
AA seq
DB search
MIGLLEQFYKNEEIQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNL
YQAQKVHEDLVALLGEKDVWLYPVNELIASEIGVASPELKAQRIEVLNRLAAGENGIIVA
PVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLRGGI
LDIYPLTEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKENVRFGPATEFLFSQEELKSGI
QHLEEGLTKTMQKLSDDKLKTKVLETVSHEIEMLKNGQSIEQMFKYLSIFYKEPASLIDY
LPEDGVVILDEISRIQETASHLETEEAEWYISLLGEGTIIQDLSFSHPFEGFLHHKKRSF
VYLTLFLRHIAHTHPQNIVNVTCKTMQDFHGQMNLLKTEIDRWNEGHFTTVVLGTDDERV
KKLQHILSDYDIEADIVEGTDILLPGRLQIAVGDLHAGFEMPMQKLVVITEKELFHKKVK
KSQRKQKLSNAERIKSYSELKVGDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND
KLYVPIEQIDQVQKYVGSEGKDPKVYKLGGNDWKKVKTKVEKSVQDIADDLIKLYAEREA
SKGYAYTPDTAEQQEFESSFPYQETEDQLRSIDEIKKDMERGRPMDRLLCGDVGYGKTEV
AIRAAFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIK
GLKDGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQVYFLYN
RVEDIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDI
PNVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFT
ELGSGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGAENIVN
VEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSAIEDIEELQEEMIDRFGDYPQEVGYLL
QIANIKVLAMKEQIELIKQNKFEVTFLFSEQASQNIDGGKLFMLGNSFGRMIGLGMEGSQ
LKIVMKTNGLETSKWLTIAENLLKGLPDVKKEVINA
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgataggtttattagagcaattttataaaaatgaagagatacaatcggttattaatggg
ttagaagatgggttaaaagaacaacttatatcagggatggcaacgtcttctcgttcatta
ttaatggcggctttatataaaaaaacaaaaaaatcacaattaatcgtgacacataactta
taccaagcacaaaaagtacatgaagatttagtggcgttacttggtgaaaaagatgtgtgg
ttatatccagtgaatgaactgatagcatcggaaattggagttgcaagtccagaattgaag
gcgcaacgtatagaagtgttaaatcgcttggctgcgggagagaatggaatcattgtagcg
ccagtggcaggattgcgtagatttttaccaataaaagaattgtggaagcaaaagcaagtt
gaaatcaatctagggcaagagattgatttagatgcgctcttgcatactttacatcatatt
ggctatgaacgtaagtcgatggtagaagctccaggggagttcagtttgcgtgggggaata
ttagatatttatcctttaactgaagaactaccatttcgtattgaattctttgatacagaa
gtcgattctattcgattatttgatgtggatgaacagcgttctcaaggtaaaaaagaaaac
gttaggtttggtccggcaacagagtttttattttcacaggaagaattaaaatcaggaatt
cagcatcttgaagaaggcctgactaagacgatgcaaaaactttctgatgataaactaaag
actaaagtgcttgagacggtaagtcatgaaattgagatgttgaaaaacgggcaaagtata
gaacagatgtttaaatacttatctattttctataaagaacctgctagtctgatagattat
ttaccagaagatggtgttgtaattttagatgagatttcccgtattcaagaaacagcatca
catcttgaaacagaagaggcggaatggtatatatcacttcttggtgaaggaacaattatt
caagatttatctttctctcacccattcgaggggtttcttcatcataaaaaaagaagtttt
gtatatttaacgttattcttgcgtcatatcgcacacacacatccgcaaaatattgttaat
gtaacatgtaaaacaatgcaagatttccatggacagatgaatttgttaaaaacagaaatt
gatagatggaatgaagggcattttacgactgttgtactcggaacagatgatgaacgtgtg
aaaaaattacaacatattttaagtgattatgatattgaggcagatattgtagaaggtaca
gatattttattgcctggaaggttacaaattgctgtaggtgatttacatgcaggatttgaa
atgccgatgcaaaagcttgttgtcattactgaaaaggagctttttcataagaaagttaaa
aaatcacaacgtaaacaaaagctatcgaatgctgaacgtattaaaagttattcggaatta
aaagttggagattatgtagttcatgtaaatcatggtataggtaaatttttaggtattgag
acattagagattaatggtgttcataaagattatttaaatattaaatatcaaggtaatgat
aagctatacgttccaattgaacaaattgatcaagttcaaaaatatgtaggatctgaaggt
aaggatccgaaagtttacaaattaggtgggaatgattggaaaaaggttaaaacgaaagtt
gaaaaatctgtacaagacattgcggatgacctaattaaactatatgctgagcgcgaagct
tcaaaaggctatgcatatacgccagatacggcagaacaacaagagttcgaatcatctttc
ccataccaagagacagaggatcagttacgttctattgacgagattaaaaaagatatggaa
cgcggacgcccgatggataggctcctttgtggtgatgtagggtatgggaagactgaagtg
gctattcgtgcggcatttaaagcgattatggatgaaaaacaagttgcaattttagtaccg
acaacgattcttgcgcagcaacactatgaaacaattcgagagcgttttcaagattatcca
atcaatataggcttattaagtagattccgtacgaggaaacaacaaaatgaaacaattaag
ggcttaaaggatggaacagtagatattgtaatcggaacacatcgtattttatctaaagat
gttacttataaagatttagggcttcttattattgatgaagaacaaagatttggtgtgaca
cataaagaaaaaattaaacaattgaaggcgaatgttgacgtattaacattaacggcaact
ccgattccgcggacgcttcatatgtctatgcttggtgtgcgcgacttatctgttattgag
acaccaccagaaaatcgtttcccagtccaaacgtatgtagtcgagtataatccagcgtta
atgcgagaggcgatagagcgagagcttgcaagaggtggtcaagtttacttcctatataac
cgtgtagaggatattgaaagaaaagcagatgaaatttcgatgttagttccagatgcccgc
gtaacgtacgcacatgggaaaatgaacgaaagcgaattagagtctgttatgctatcattt
ttagaaggacagcatgatgttcttgtaagtacaacaattattgagacgggtgtagatatt
ccgaatgtaaatacgttaattgtatttgatgcagatcgtatgggattatcacagttgtat
cagcttcgtgggcgtgttggacgttctaatcgtgttgcatatgcatactttgcatataaa
cgtgacaaagtgctgtcagaggttgcagagaagcgtctacaagcaattaaagagttcacg
gaacttggatctggtttcaaaattgcgatgagagatttatctattcgtggagcaggtaat
ttgttaggggcagaacagcatggatttattgattctgtcggatttgatctatattctcaa
atgttaaaagatgcaattgaacagcgtagaggaacagatggggctgaaaatatagttaat
gttgaaattgacttagaggtagatgcatacttaccagatgcttatatttcagatagtaag
caaaaaattatgatgtataaacaatttagaggtgtttctgcaattgaggatattgaagaa
ttgcaggaagaaatgatcgatagatttggcgattatccacaagaagttggttatttatta
caaattgcaaatattaaagtgttggcaatgaaagaacaaattgaattaattaagcagaat
aaatttgaagtaacattcctgttttctgaacaagcaagtcaaaatattgatggtggaaaa
ttattcatgctcggaaatagttttggacgtatgattggtttaggaatggaaggatcacaa
ttgaaaattgttatgaaaacaaatggcttagagacatcgaagtggttaacgattgctgaa
aatttattaaaaggcttaccagatgtaaaaaaagaagtaataaatgcctaa
DBGET
integrated database retrieval system
