Bacillus cabrialesii: EFK13_03910
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Entry
EFK13_03910 CDS
T08101
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
bcab
Bacillus cabrialesii
Brite
KEGG Orthology (KO) [BR:
bcab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
bcab03009
]
EFK13_03910 (rlmD)
Enzymes [BR:
bcab01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
EFK13_03910 (rlmD)
Ribosome biogenesis [BR:
bcab03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
EFK13_03910 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
TRM5-TYW2_MTfase
Methyltransf_15
PrmA
MTS
RrnaAD
Methyltransf_11
N6_N4_Mtase
Methyltransf_23
Methyltransf_4
Methyltransf_32
TPMT
UPF0020
PCMT
N6_Mtase
Methyltransf_12
Ubie_methyltran
WH4_Lhr
Motif
Other DBs
NCBI-ProteinID:
UQE79779
LinkDB
All DBs
Position
763772..765157
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AA seq
461 aa
AA seq
DB search
MKMKPPVEKNEYYDVTFEDLTHEGAGVAKVQGFPIFVPNALPEEKAQIKVTRVKKGFAFG
RLIEMKKESPHRTDAPCPIYKQCGGCQLQHMTYEGQLLFKQKQVKDVLERIGKLDLSNVT
VHPTLGMEDPWNYRNKAQVPVGEREGGLVAGFYQQRSHDIIDMSACLIQQSKNDEAVQAV
KDICAKYGVKAYNEERHKGWLRHIMVRYGVVTGEMMIVFITRTNDFPHKVKIIEDITTAF
PHVKSIVQNINPNKTNVIFGNETNVIWGEEYIYDLIGDVKFAISARSFYQVNPEQTKVLY
DKALEYAELQGEETVIDAYCGIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGITN
AAFAVGEAETVIPKWYEEGITADTLVVDPPRKGCDEALLRTIVEMKPKRVVYVSCNPGTL
ARDLRVLEDGGYVTREVQPVDMFPHTNHVECVAVLELKKGN
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatgaaacccccagtagaaaaaaacgaatactacgacgtgacatttgaggatttg
acccacgaaggagcaggcgtcgcaaaggtgcagggcttcccgatctttgtcccaaacgcc
ctgccggaggaaaaagcccaaatcaaagtcacgcgtgtcaaaaaaggcttcgctttcggc
cgcttgatcgagatgaaaaaagaaagcccgcatagaacggacgccccatgtccaatctac
aagcaatgcggaggctgccagcttcagcacatgacctacgaaggccagctcttgtttaaa
cagaaacaagtcaaagacgtcttagaacggatcggcaagctggacctgtcaaacgtcacc
gtgcatccgacacttggcatggaagacccgtggaactacagaaacaaagcacaggtgccg
gtaggagaacgagaaggcggactcgtcgccggtttctatcagcaaagaagccatgacatc
atcgacatgagcgcctgcctgatccagcaatccaaaaacgacgaagccgttcaagccgtc
aaagacatttgcgccaaatacggtgtcaaagcgtacaacgaagaacgccacaaaggctgg
ctccgccacatcatggtcagatacggcgtcgttacgggcgaaatgatgatcgtcttcatc
acaagaacaaacgacttcccgcacaaagtgaagatcattgaagacatcacaacagcgttc
ccgcacgtcaaatccatcgtgcaaaacatcaacccaaacaaaacaaacgtcatctttggc
aacgaaacaaacgtcatctggggcgaagaatacatctacgacctcatcggagacgtcaaa
ttcgccatctccgccagatcgttctaccaagtcaacccggagcagacaaaagtgctgtac
gacaaagcgcttgagtacgcggaactgcaaggtgaagaaaccgtcatcgacgcctactgc
ggcatcggtacaatttctctatttctggcgaagcaggcgaaaaaagtgtacggcgtagaa
attgtgccggaagcgattgaggacgcaaagcgaaacgcagaattaaacggcatcacaaac
gcagcattcgcagttggagaagcagaaaccgtgattccaaagtggtacgaagaaggcatc
acggccgatacactagtcgtcgacccgccaagaaaaggctgcgacgaagccctcctgcgc
acgattgtggagatgaaaccgaagcgggtggtgtatgtgtcctgtaatcctggtacgctt
gcgagggatttgcgggtgcttgaggatggcgggtacgtgacgcgcgaagtgcagcctgtg
gatatgtttccgcatacgaatcatgtggagtgtgtggcagtgctggaacttaaaaaaggc
aactaa
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