Bacillus cabrialesii: EFK13_06680
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Entry
EFK13_06680 CDS
T08101
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bcab
Bacillus cabrialesii
Pathway
bcab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EFK13_06680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcab03019
]
EFK13_06680
03400 DNA repair and recombination proteins [BR:
bcab03400
]
EFK13_06680
Enzymes [BR:
bcab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EFK13_06680
Messenger RNA biogenesis [BR:
bcab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EFK13_06680
DNA repair and recombination proteins [BR:
bcab03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
EFK13_06680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
SWI2_SNF2
Pribosyltran
Motif
Other DBs
NCBI-ProteinID:
UQE80247
LinkDB
All DBs
Position
1294417..1296471
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AA seq
684 aa
AA seq
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MRQRALSLLRAMVNNQAVFKEDQLEAIESVLNREKTLVVQRTGWGKSMVYFIATKLLREQ
NEGPTILISPLLSLMRNQIESARKIGINAVTINSSNDEEWDEIDELLSRNQCDILIVSPE
RLSNQRFINNTLPLIENNGGIGFFVVDEAHCISDWGHDFRPDYRRIVRIVNGLSPNVPIL
ATTATANNRVVRDIEEQLGNDLKIMRGTLKRESLRLSVLHMPDHAKRLAWLAEQIPQMNG
TGIIYCTTIGECDRVSSWLQSQGINALPYHSRCEDRELLESKLIRNEIKALVATDALGMG
FDKPDLGFVFHYSMPGSLVSYYQQIGRAGRSLSNADVVLLFSEDDKFIHEGFIDSSLPEQ
SYMEIILSLLIQYGGLSKYELLSKVNFSNGQVDQCLKLLEIDQLVFKQGTKFYRSAKPVT
SELLKNENVHQTKITELNNVVEYANTSECLMKFISEELDDIDIDDCGKCQNCIGDSIFPE
EVSSSLLWAANDFLYNQPFVIEPRKQWPPNGVGGLRGKISVELRNEEGRALSLYGTAGIG
RMVKVARYENGYFGEGLVEATVRFISTKWDMNPQPQWVTSVPSLRNPLLVQSFAKSVAER
LGLPYLEVIDKVKHTTEQKYMKNSFLQASNVIDAFSVNQVCPSTPVLLIDDIMNSGWTFT
ICGVLLRNAGSGPVIPFALSTTPN
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgagacaaagagctttaagtttattacgtgcaatggtgaataatcaagctgtctttaaa
gaggatcagttagaagcaattgaatccgtattaaatagagagaagacattggttgttcaa
cgtactggatggggaaaaagtatggtttactttattgcaactaaattattaagagagcaa
aatgaaggacctacaatacttattagccctctcctttctttaatgagaaaccagattgag
tcagcgaggaaaattggaatcaatgctgtgacgataaatagtagtaatgacgaagaatgg
gacgaaattgatgaactcctttctagaaatcaatgtgatattcttattgtttctcctgaa
cgattatcaaatcaacgctttattaacaatactttacctttaatagagaataatggagga
attggcttctttgttgttgatgaagctcactgtatttctgattgggggcatgattttaga
cctgattacagacggattgttaggattgttaatggtctttctcccaatgttcctatatta
gctaccacagctacagcaaataacagagttgttagggatatagaagaacagttagggaat
gacttaaaaataatgagaggaacactaaaaagagagtcattaaggctttctgttctacat
atgccagatcatgcaaaaaggttagcttggttagcagaacagattccccaaatgaatggc
acagggattatttattgtactaccatcggagagtgtgacagggtttccagttggcttcag
agtcaaggaattaatgctcttccatatcatagtagatgtgaagatagagaactgctagaa
agtaagttaattagaaatgaaataaaggccttagttgcaaccgacgctttaggtatgggt
tttgataaacctgatttaggttttgtgtttcactatagtatgcctggttcattagtatct
tactaccagcaaattggcagagcaggaaggtccctatctaacgctgatgtagtgctactt
ttttcagaagatgataaatttatacacgaagggtttattgatagttctttaccagaacag
agctatatggaaataatattgagtttattgatacagtatgggggacttagtaagtatgag
ttattatctaaagttaacttttcaaatggacaagttgatcaatgtctaaagttgcttgaa
atagatcaacttgtctttaaacaaggtacaaaattttatcggtcagccaaaccagttact
tctgagttgctgaaaaatgaaaatgtgcaccaaaccaagataactgaattaaacaacgta
gtggaatatgccaatacaagcgaatgcttaatgaaatttatttcagaggaattagatgat
attgatatagacgattgcggaaagtgtcaaaattgcattggagacagtatctttcctgag
gaagttagcagcagcctgttgtgggcagcaaatgacttcttgtataatcagccatttgtg
attgaacctagaaaacaatggccacctaatggagttggggggctaagagggaaaatttct
gttgaactaagaaacgaagagggaagggcattgagtctttatggcactgctggtatcgga
agaatggttaaggtagcgcgatatgaaaatgggtattttggagaaggtcttgtagaggca
acagttcgttttatatccactaaatgggacatgaatcctcaaccccagtgggttacttca
gttccttctctgcgaaatccgttactagtccaaagctttgctaaaagtgtagctgaaaga
ttaggattaccgtaccttgaagtaatcgataaagtaaagcatactacagaacaaaagtat
atgaaaaattcatttcttcaagcttcaaatgttatagatgctttttctgttaaccaagtt
tgtccttccacgcccgttttgttaatagatgatataatgaattcaggatggacatttact
atatgtggtgttttgttaagaaatgctgggagtggacctgtaattccatttgcactttct
acaacgccaaattga
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