Bacillus cabrialesii: EFK13_17550
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Entry
EFK13_17550 CDS
T08101
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
bcab
Bacillus cabrialesii
Pathway
bcab02020
Two-component system
bcab02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bcab00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
EFK13_17550 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
EFK13_17550 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bcab03021
]
EFK13_17550 (rpoN)
Transcription machinery [BR:
bcab03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
EFK13_17550 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
MarR_2
HTH_17
Sigma70_r4
HTH_IclR
HTH_Crp_2
HTH_23
HTH_11
MarR
HTH_3
HTH_38
DUF1425
HTH_Tnp_ISL3
YtzH
HTH_AraC
HTH_32
Motif
Other DBs
NCBI-ProteinID:
UQE78494
LinkDB
All DBs
Position
complement(3427546..3428856)
Genome browser
AA seq
436 aa
AA seq
DB search
MDMKLQQVQVLKPQLTQELRQAITLLGYHSAELAEYIDELSLENPLIERKETDTPPLSYH
KTNKNRMNAQEAGLQLSAPQRTLQDVLKQQSLDMNLTNTEKKIFNYLIHSLDSNGYLEEE
VEEAAQRLSVSTKETEAVLAKLQSLEPAGIGARSLQECILLQLKRLPNRNEQAEMLVSAH
FDAFAQKNWKALSNETGIPLHVIQDISDDIAALHPRPGLLFARPEQDVYIEPDIFITVKN
GHIAAELNTRSFPEIDLHPQYSTLLSSGSCQDTASYLSAKYQEWRWLSRALRQRKQTITR
IVNELITRQKDFFLKGRSAMKPLTLREIADCLGLHESTVSRAIKGKTIQTPYGLFEMKLF
FSAKAEASGDGDASNYAVKTHLQELINQEDKTKPLSDQKLADLLYEQRGIQISRRTVAKY
RDQMNIPSSAARKRYK
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atggatatgaaacttcagcaagtacaagtattaaagcctcaactgacacaggagctcagg
caggccatcacgctgcttggctatcattcggcagaactcgccgaatacattgatgagctc
tcactggaaaaccctcttattgaacgaaaggaaacagacacaccgccactatcttaccat
aaaacaaataaaaacaggatgaatgcacaggaagccggccttcaattaagtgctccgcaa
agaacactgcaggatgtgttaaaacagcagtcactcgatatgaatctgacaaacactgag
aaaaaaattttcaattatctgattcattcgcttgattcgaacgggtacctggaagaagaa
gtggaggaggcagcgcagcgcctatctgtttcgaccaaggaaacggaagctgttttggca
aaactccagtcattagagccggctggaatcggcgcaagatcgctgcaagaatgcatcctg
cttcaattaaaacggctgcctaacagaaatgagcaagcggagatgcttgtttcagctcat
tttgatgcttttgcgcaaaaaaactggaaagcgctttcaaatgagactggaattcctctt
catgtcattcaggatatctctgatgacattgccgcacttcatccaagaccgggccttcta
tttgcgcggccagagcaagatgtgtatatcgagcccgacatttttatcaccgtgaaaaac
gggcacatcgcagcggagctgaatacccgctcgtttccggagatcgatctgcacccgcag
tacagcacgcttttatcatccggctcctgccaggacaccgcctcttatttatctgcgaaa
taccaggaatggcgctggctgagccgcgcgctgcggcagcgaaaacagacgattacgaga
attgtcaatgagctgatcacacgccaaaaggatttctttctgaaagggcgaagcgcaatg
aagccgctgactctcagagaaatagcggactgcctaggccttcatgaatcaactgtgagc
cgggcaatcaaagggaaaacgatacaaacgccgtacggactgtttgagatgaaactcttt
ttctcagcaaaagctgaggcttcaggagatggagatgcgtctaactacgcagttaaaacg
catcttcaagaactcatcaatcaagaggataaaacaaaaccgctttcagatcaaaagctt
gccgatttgctatatgaacagcgcggcatccaaatctccaggcgcaccgtggcaaaatac
cgcgatcaaatgaacattccgtcatcggcagcgagaaaacgatataaataa
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