Bacillus cabrialesii: EFK13_20125
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Entry
EFK13_20125 CDS
T08101
Symbol
dbpA
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bcab
Bacillus cabrialesii
Pathway
bcab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EFK13_20125 (dbpA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcab03019
]
EFK13_20125 (dbpA)
03009 Ribosome biogenesis [BR:
bcab03009
]
EFK13_20125 (dbpA)
Enzymes [BR:
bcab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EFK13_20125 (dbpA)
Messenger RNA biogenesis [BR:
bcab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EFK13_20125 (dbpA)
Ribosome biogenesis [BR:
bcab03009
]
Prokaryotic type
rRNA helicases
EFK13_20125 (dbpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
UTP25_NTPase-like
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-ProteinID:
UQE78970
LinkDB
All DBs
Position
complement(3941352..3942791)
Genome browser
AA seq
479 aa
AA seq
DB search
MSHFKNYQISHDILRALEGLGYTEPTEVQRSVIPAALERKDLVVKSQTGSGKTASFGIPL
CELADWNENKPQALILTPTRELAVQVKEDITNIGRFKRIKATAVFGKSSFDKQKAELKQK
SHIVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPTERTTML
FSATLPEDIEKLSRQYMRNPEHIEIKAAGITTRNIEHAVIQVREEHKFSLLKDVLMTENP
DSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQDDRFDVMNEFKRGEYRYLVATDVA
ARGIDIENISLVINYDLPVEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIG
FEIQKIEAPSQEEVAKKKPDFLSKLNDRPETKKDKSEELNKDIMKLYFNGGKKKKIRAVD
FVGTIAKIDGVTADDIGIITIMDNASYVEILNGKGPQVLKVMKNTTVKGKKLKVNKANK
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgagtcattttaaaaactatcaaatcagtcatgacattttacgagcactggaaggacta
ggatatacagaaccgaccgaggtgcagcggagcgtgattcccgctgcccttgaacgaaag
gatcttgtcgtcaaatcacagacgggaagcgggaaaacggcttcattcgggattcctctc
tgtgagctggcggattggaatgaaaacaagccgcaggcgctgatcctgacaccgacccgg
gagctggcggtgcaagtaaaagaggatatcacgaacataggaagatttaaacggatcaaa
gcgacagccgtgtttggaaagtcctccttcgataaacaaaaagccgagcttaaacaaaaa
agccacattgttgtcggcacgccgggacgtgtcttggatcatatcgaaaaaggcacactg
ccgttagaccgtctctcctatttggtcattgatgaagccgatgagatgctgaatatgggc
tttatcgagcaggtcgaggcgattatcaagcatctgccgactgagcgcacgacgatgctg
ttttcggcgacgctgccggaggacattgagaaattgagccgtcaatatatgcgaaacccg
gagcatatcgaaatcaaagcggccggcattaccaccagaaatattgaacatgcggtgatt
caagtaagagaagagcataagttttctttgctgaaagatgtgctgatgacggagaatcct
gacagctgcatcattttctgccgcacgaaagagcatgtcaatcagctgaccgatgaattg
gatgacttagggtatccatgcgataaaattcacggcggaatgattcaggatgaccggttc
gacgtcatgaatgaatttaaacggggcgagtaccgttacttagtcgcgacagatgtcgcc
gcgcgcgggattgatattgaaaatatctcccttgtcatcaactatgatctgccggttgaa
aaggaaagctatgtgcaccgcacaggccggacagggcgcgcggggaacaaaggaaaggct
atttcatttgtcacagccttcgaaaaacggtttttagctgacattgaagaatatatcggg
tttgagattcaaaaaatagaagctccttctcaagaggaagtggccaagaagaaaccagat
tttctatctaaattgaatgaccgtccggaaaccaaaaaggacaaaagcgaagagctgaat
aaagacattatgaagctgtattttaacggcggaaagaaaaagaaaatcagagccgttgat
tttgtagggacgattgccaaaattgacggtgtgacagctgatgacatcggcattatcaca
atcatggataacgcctcttatgtggagattttaaacggaaaaggccctcaagttctcaaa
gtgatgaagaacacaaccgtcaaagggaaaaagctcaaggtgaataaagcgaataaatga
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