Bacteroides caccae: CGC64_04045
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Entry
CGC64_04045 CDS
T05064
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bcac
Bacteroides caccae
Pathway
bcac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CGC64_04045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcac03019
]
CGC64_04045
03009 Ribosome biogenesis [BR:
bcac03009
]
CGC64_04045
Enzymes [BR:
bcac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CGC64_04045
Messenger RNA biogenesis [BR:
bcac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CGC64_04045
Ribosome biogenesis [BR:
bcac03009
]
Prokaryotic type
rRNA helicases
CGC64_04045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ASM65206
UniProt:
A0A174S0T5
LinkDB
All DBs
Position
complement(1034055..1035977)
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AA seq
640 aa
AA seq
DB search
MKTFEELGVSPEIRRAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLP
LLQQIDVKNRIPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSLK
RGVHIIVATPGRLLDLMERKTVSLSTIRNVVMDEADEMLNMGFTDSINAILADVPQERNT
LLFSATMSPEIARISKNYLRNAKEITIGRKNESTSNVKHVAYTVHAKDKYEALKRIVDYY
PQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLLVATD
VAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMREIERI
IGKKFIPGEMPTAAGICQKQLLKVIDDLEKVKVNEEEISEFMPDIYRKLEWLSKEDLIKR
MVSHEFNRFAEYYRNRAEIEVPTDSRGERTGRGDRKEGGFEKRSRKAAPGFNRLFINLGK
TDSFFPSDLIGLLNSNTRGRIELGRIDLMQNFSFFEVPEKEAINVVKALSRAKWNGRKVV
VEVSSEEGGKGHENGSSERKGGKRFGKGEDRTPRYDNKDRKTKDASTKGPKSGKKEKPSR
AERGYSDARGPKKKDDWQEFFKDKEPDFSEEGWARRKPKK
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgaagacatttgaagagcttggcgtttctccggagatacgtagagcaattgaagaaatg
ggatacgagaatcccatgccggtacaagaggaagtgattccgtaccttttaggagaaaat
aatgatgtagtagctcttgcacagacaggaacaggtaaaacagccgcattcggcctgccc
ttgctccaacagattgacgtaaagaacagaattccacaatcgcttatcctctgccctact
cgtgagctttgtctccagatagcaggagatttgaacgattattccaaatacattgacggg
ctgaaagtactcccggtatacggtggttcttctattgacagtcagatacgcagcctgaaa
cgcggtgtacatatcatcgtggccactcccggacgtttattggacttaatggagcgcaag
accgtatccttgtccactattcgcaacgtggtaatggacgaagcggacgaaatgctgaat
atgggatttacggatagtatcaatgctattcttgccgatgttccccaagaacgtaatacg
ttgcttttctctgcaacaatgagcccggaaattgcgcgtatctcaaagaactatctgcgc
aacgctaaagaaatcactatcggccgcaagaatgaaagtaccagcaacgtaaagcacgtt
gcctataccgttcatgctaaagataagtatgaagcactgaagcgtatcgtagactattat
ccgcaaatttacggtatcattttctgccgcacacgtaaggaaacacaagaaattgcagat
aaactgatgcaggaaggttataatgccgactcattgcacggtgaattgtcacaggcacaa
cgtgacgccgtgatgcagaaattccgtatccgtaacctgcaactgctcgttgctacggac
gtagctgcccgcgggctggacgtggacgacctgacacacgtcatcaattacggattgccg
gatgatacggaaagctatactcaccgtagcggacgtacaggacgtgccggcaagacaggt
acttctatcgccattatcaacctgcgtgagaaagggaaaatgcgtgaaattgaacgtatt
atcggcaagaagtttattcccggagaaatgccgacggcagcaggaatttgccagaaacag
ttacttaaagtaattgacgacctcgagaaagtaaaagtaaacgaagaggagatttctgaa
ttcatgcccgatatttaccgtaagctagaatggttaagtaaggaagacttgattaaacga
atggtttctcacgaatttaaccgctttgccgaatattaccgcaaccgcgcagaaatagaa
gtaccgaccgatagccgtggcgaacgtaccggaagaggtgaccgaaaagaaggtggtttc
gaaaaaagaagccggaaagctgctccgggcttcaaccgtttattcattaacttgggcaaa
acggacagtttcttccccagtgacctcatcggcttgctgaatagcaatacacgtggacgc
attgaattaggacgtatcgacttaatgcagaacttctctttctttgaagttcccgaaaaa
gaggctatcaatgtcgtaaaagctctaagccgtgcgaaatggaacggacggaaagtcgta
gtagaagtatctagtgaagaaggcggaaaaggacatgaaaacggttcaagtgaacgcaaa
ggcggaaaacgattcggcaaaggagaagatcgtactccacgctacgacaataaagataga
aaaacaaaagatgcttctaccaaaggtccaaaatccggcaaaaaagaaaaaccgagtcgt
gcagaacgaggctattcggatgctcgcggtccaaaaaagaaagacgactggcaggaattc
tttaaagacaaagaaccagacttcagtgaagaagggtgggcacgcagaaaaccaaagaaa
taa
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