Bacteroides caccae: CGC64_10075
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Entry
CGC64_10075 CDS
T05064
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bcac
Bacteroides caccae
Pathway
bcac03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bcac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CGC64_10075 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bcac03400
]
CGC64_10075 (mfd)
Enzymes [BR:
bcac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CGC64_10075 (mfd)
DNA repair and recombination proteins [BR:
bcac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CGC64_10075 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
DUF3638
RecG_dom3_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ASM66259
UniProt:
A0A413J122
LinkDB
All DBs
Position
2566977..2570348
Genome browser
AA seq
1123 aa
AA seq
DB search
MTITELQQLYAAHPNMAMMKRLLKDTSVQTIFCGGLYASAASLFSSILVQEGGCPFVFIL
GDLEEAGYFYHDLTQVLGTETVLFFPSSFRRSIKYGQKDAANEILRTEVLSRLQKGEKGL
CIVTYPDALAEKVVSRKELSDKTLKLNVGEKVDTTFITDVLHSYGFEYVDYVYEPGQYAV
RGSIIDVFSFASEYPYRIDFFGDEVESIRTFEVESQLSREKKEGVSIVPDLAVTGDVTTS
FLDFIPKETTLAMRDFLWLRERIQVVHDEALTPQAIAVQEVEENGGITLEGKLIDGSEFT
VRALDFRRLEFGNKPTGTPNASVTFDTSAQPIFHKNFDLVAGSFKEYLEKGYTLYICSDS
MKQTDRIRAIFEDRGDKIKFTPVERTVHEGFVDNTLRLCFFTDHQLFDRFHKYNLKSDKA
RSGKVALSLKELNQFTPGDYVVHTDHGIGRFSGLVRIPNGDTTQEVLKLVFQNEDVVFVS
IHSLHKVSKYKGKEGEAPRLNKLGTGAWEKLKERTKTKIKDIARDLIKLYSQRRQEKGFS
YSPDSFLQRELEASFIYEDTPDQSKATVDVKTDMESDRPMDRLVCGDVGFGKTEVAIRAA
FKAVADNKQVAVLVPTTVLAYQHFQTFRERLKGLPCRVEYLSRARTAAQAKAVLKELKEG
DVGILIGTHRILGKDVRFKDLGLLIVDEEQKFGVSVKEKLRQLKVNVDTLTMTATPIPRT
LQFSLMGARDLSVISTPPPNRYPIQTEVHTFNEEVITDAINFEMSRNGQVFFVNNRIANL
PELKAMIERHIPDCRVAIGHGQMEPAELEKIIFDFVNYDYDVLLATTIIESGIDIPNANT
IIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLLAPPLSSLTAEGRRRLQAIENFSDLGSG
IHIAMQDLDIRGAGNLLGAEQSGFIADLGYETYQKILSEAVHELKNDEFADLYADEIKGE
GQISGEGFVDECQVESDLELLLPANYVTGSSERMLLYRELDGLMLDKDVEAFRSRLEDRF
GPVPPETEELLRIVPLRRLAARLGAEKIFLKGGRMTLFFVSNPDSPFYQSQAFGKVIDYM
MKYTRRCDLREQNGKRSMLIKDVTNVETAVSVLQEVVALPVKE
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atgacgataactgagttgcaacaactatatgctgcccatcctaacatggcaatgatgaag
cgtttgttgaaggatacttctgttcaaactattttttgtggaggattatatgcgtctgct
gcttcgcttttttcttctatattggtgcaggagggaggttgtccttttgtctttattctg
ggcgatctggaggaagcggggtatttttatcacgacttgacgcaagtgttggggacagaa
actgtacttttctttccttcttcgttccgccgttccattaagtacgggcaaaaagatgcg
gcaaatgagattctccgcacggaagtattgagccgtttgcagaaaggggagaagggcttg
tgcatcgtcacctatccggatgcattggcggagaaagtcgtatcccgtaaagaattgagc
gataagactctgaaactgaatgtcggcgagaaggtagacacgacctttatcacggatgtg
ttgcatagttatggtttcgaatatgtggattatgtatatgagccggggcagtatgccgtt
cgtggtagcatcatcgacgtcttttcttttgcttcggaatatccttaccgcattgacttt
tttggagacgaagtagagagtatccgtacctttgaggttgaatcccagctatctcgggag
aagaaagaaggagtgtctatcgtgcccgatttggctgtgacgggagatgttactacctcg
tttttggatttcataccgaaagagactaccttggcaatgcgtgacttcctttggttgcgt
gaacggattcaggtcgtgcacgatgaggcgttgacaccgcaggcgatagccgtacaggaa
gtcgaagaaaatggcggtattacgttggaaggcaaactgatagacggcagtgaatttacc
gtgcgtgcacttgatttccgccggctggagtttggtaacaagccgaccggtactccgaat
gccagcgtcacttttgatacttccgcacagcctatctttcataaaaacttcgacttggta
gccggctctttcaaggagtatttggaaaaaggatataccctttatatttgtagtgacagc
atgaagcagacggatcgtatccgggcaatcttcgaagaccgaggggataagatcaaattt
actcctgtagaacgtactgtgcatgaaggttttgttgataacacattgcgtctctgtttc
tttacagatcaccagttgttcgaccgtttccataaatataatctgaaaagcgataaggct
cgttcaggtaaagtggccctgtccttgaaagaactgaatcagtttactccgggtgattat
gtggtgcatacggaccacggtatcggacgtttttccggattggtgcgtattccgaatgga
gatactacgcaagaagttctgaaactggtttttcaaaatgaggatgtggtgtttgtctcg
attcattctttgcataaggtctctaaatataaaggtaaggagggcgaagctccccgcctt
aataagttgggaacgggggcatgggagaaactgaaagagcgtacaaaaaccaaaatcaag
gatattgcccgcgatttgattaagttgtattcgcaacgtcgtcaggagaaaggcttttct
tatagtcccgacagtttcttgcagcgtgagttggaagcgtcttttatttatgaagataca
cccgatcagagcaaagctactgtcgatgtgaagaccgatatggagagtgaccgcccaatg
gaccgtctcgtctgtggggatgtaggctttggaaaaacggaagtggctatccgggcagct
tttaaggcggtggcggacaataagcaggttgcagttctggtgccgaccacggtgcttgct
tatcagcatttccagaccttccgcgaacgtttgaagggattgccttgccgggtggaatat
ctgagccgtgcacgtacggccgcacaggcaaaagcggtgctgaaagaattgaaggaaggt
gatgtcggtatacttatcggtactcatcgtattttgggaaaagatgtccggttcaaggat
ttaggattactgattgttgatgaggaacagaaattcggtgtttccgtcaaggagaagtta
cgtcagttgaaggtaaatgtcgatacattgactatgactgccacgcccattccccggacg
ctgcaattctcattaatgggtgcgcgagacctgagtgtgatctctacaccgccgcctaac
cgttatccgattcagaccgaagtgcatacctttaatgaagaagtgataacggacgctatc
aactttgaaatgagtcgtaacggacaggtgttttttgtcaacaaccggatagcaaacctg
cccgaattaaaagcgatgattgaacgccatatccctgactgtcgtgtggcaattggacac
gggcagatggaacctgccgaactggagaaaatcatttttgattttgtcaactatgactat
gacgtactccttgcaactactattattgaaagtggcattgatattccgaatgccaatacg
atcatcatcaatcaggcgcagaattttggtttgagtgaccttcatcagatgcgtggccgt
gtagggcgcagcaataagaaagcgttctgttatttgttggctcctccgttgagtagcctg
acagcagagggacgccgtcggttacaagcaattgagaattttagtgatttgggcagtggt
atccatatcgccatgcaggatttggatattcgcggtgccggtaacttgcttggagccgag
caaagcggatttatcgccgacctgggatatgaaacgtatcaaaagattctttccgaagct
gttcacgaattgaagaatgatgaatttgcagatttgtatgcggatgaaatcaaaggtgaa
gggcagattagcggtgaaggttttgtggatgaatgtcaggtggaaagtgaccttgaactg
ttattgcctgctaattacgtgacgggcagtagcgaacgtatgttgctttatcgtgaattg
gacggtttgatgctggataaagacgtagaggcattccgttcccgtctggaggaccgtttc
ggacctgttccgccggaaacggaagaattgcttcgtattgttcctctccgccgtctggca
gcacgcttgggagcggagaagatcttcctgaaaggtggtcggatgacgttgttctttgtc
tccaacccggatagtccgttctatcaaagtcaggctttcggtaaagtgatagattatatg
atgaaatatacccgccgttgtgacctgcgtgaacagaacggcaagcgaagtatgctgata
aaagatgtgactaatgtggaaactgcggtgagtgtgttgcaagaagttgtggcgttgccg
gtgaaagaatga
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