Bacteroides caccae: CGC64_12225
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Entry
CGC64_12225 CDS
T05064
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
bcac
Bacteroides caccae
Brite
KEGG Orthology (KO) [BR:
bcac00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
bcac03009
]
CGC64_12225
Enzymes [BR:
bcac01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
CGC64_12225
Ribosome biogenesis [BR:
bcac03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
CGC64_12225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRM5-TYW2_MTfase
TRAM
Methyltransf_15
Methyltransf_25
Cons_hypoth95
N6_N4_Mtase
MTS
PCMT
Methyltransf_11
UPF0020
PrmA
Motif
Other DBs
NCBI-ProteinID:
ASM67923
UniProt:
A0A415SQU1
LinkDB
All DBs
Position
complement(3019211..3020575)
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AA seq
454 aa
AA seq
DB search
MAAEGKAIAKVNDLVIFVPYVVPGDVVDLQIKRKKNKYAEAEAVKFHELSPNRAVPFCQH
YGVCGGCKWQVLPYPEQIRYKQKQVEDNLRRIGKIELPEISPILGSAKTEFYRNKLEFTF
SNKRWLTNEEVRQDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNAIRDYAYE
HDYSFINLRTQEGMLRNMIVRTSSTGELMVIVICKITEDHEMELFKQLLQFVADSFPEIT
SLLYIINNKCNDTINDLDVYVFKGNDHIFEEMEGLRFKVGPKSFYQTNSEQAYNLYKVAR
EFAGLTGNELVYDLYTGTGTIANFVSRRARQVIGIEYVPEAIEDAKVNAEINDIKNTLFY
AGDMKDILTQEFINEHGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARD
LQLLDEKYKVKAVQPVDMFPHTHHVENVVLLELR
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
gtggctgccgaaggaaaagccattgcaaaagtaaacgacctggtaatttttgttccttac
gtagtgccgggtgatgtcgtagacctgcaaatcaagcgtaaaaaaaataaatatgccgaa
gccgaagcggtaaagttccacgaactatcgcccaatcgtgcagttcctttctgccagcac
tatggtgtttgcggcggctgtaaatggcaagtgctaccctatccggagcagatcagatac
aagcaaaagcaggtggaagacaacctgagacgtatcggaaagattgaacttccggagatt
tcgccgattttaggttccgcaaaaacagagttttaccggaacaaactggaatttacattt
tccaacaaacgttggttgacgaacgaagaagtccgtcaggatgtgaagtatgaccagatg
aatgcagtaggtttccatattccgggagcattcgacaaggtattggcaatcgaaaagtgc
tggttgcaggatgatatatccaaccggattcgtaatgcgatacgcgattatgcttatgag
catgactactcatttatcaacctgcgtacgcaagaaggtatgttacggaatatgattgtc
cgcacttcctccacaggtgaactaatggtaatcgtgatctgcaagattacggaagatcat
gaaatggaactgttcaagcagttgcttcaattcgtggcagattctttcccggaaataact
tctctcctatacattattaataataagtgcaacgatacgatcaatgatctggatgtgtat
gtgttcaaaggaaacgatcatatctttgaagaaatggaaggattgcgtttcaaagtggga
ccgaaatcattctatcaaacaaattcagaacaggcatataatttatataaggtagcccgc
gagtttgccggactgaccggaaatgaacttgtatatgacctttacaccggaaccggaact
atcgccaacttcgtatcacgccgggctcgtcaggtgattggtatcgagtatgtgccggaa
gccattgaagacgcaaaggtgaacgcagaaatcaacgatattaagaataccctgttttat
gcaggtgacatgaaggatattctgactcaggaatttatcaacgagcatggacgtccggat
gttatcatcaccgaccctcctcgtgcaggtatgcatcaggatgtggtggatgtaatcttg
tttgccgaacccaaacgaattgtttacgtaagctgtaatcccgccactcaggcacgtgac
ctgcaattactggacgaaaaatataaggtgaaggccgtgcagccggtagatatgttccct
catactcaccacgtggaaaatgtggtattgctggaactccgataa
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