Bacteroides caccae: CGC64_16245
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Entry
CGC64_16245 CDS
T05064
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
bcac
Bacteroides caccae
Pathway
bcac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CGC64_16245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bcac03021
]
CGC64_16245
03019 Messenger RNA biogenesis [BR:
bcac03019
]
CGC64_16245
Transcription machinery [BR:
bcac03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CGC64_16245
Messenger RNA biogenesis [BR:
bcac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CGC64_16245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
OB_RNB
AAA
Motif
Other DBs
NCBI-ProteinID:
ASM67334
UniProt:
A0A174RGR6
LinkDB
All DBs
Position
3936341..3938539
Genome browser
AA seq
732 aa
AA seq
DB search
MYNIIQLNDKDLSELQVIAKELGIKKTDSLKKEDLVYKILDEQAIAGATKKVAADKLKEE
RKEEQKKKRSRVAPAKKDNKVVSATKEGEAEKAKEAAPAKPQQPSKKEESANKEKETPAV
EVKAENTAAPKRKVGRPRKNADAAEQKEVESVKTATPATPKVTEDKVVTEKAPEVIEKAV
PAQAPEKKTKANKPAEEKKVVVKPQPQKKAEPVIDEESNILSGADDDDFIPIEDLPSEKI
ELPTELFGKFEATKTEPAQTATEQQAPQPQQQAHQQQQQQRPRIVRPRDNNNGNNNASNS
NNNANNNNNNNFQRNNNQNQNQQRVPMPRPAQPNNANENLPVPQQQQERKVIEREKPYEF
DDILNGVGVLEIMQDGYGFLRSSDYNYLSSPDDIYVSQSQIKLFGLKTGDVVEGVIRPPK
EGEKYFPLVKVSKINGRDAAFVRDRVPFEHLTPLFPDEKFKLCKGGYSDSMSARVVDLFA
PIGKGQRALIVAQPKTGKTILMKDIANAIAANHPEVYMIMLLIDERPEEVTDMARSVNAE
VIASTFDEPAERHVKIAGIVLEKAKRLVECGHDVVIFLDSITRLARAYNTVSPASGKVLS
GGVDANALHKPKRFFGAARNIENGGSLTIIATALIDTGSKMDEVIFEEFKGTGNMELQLD
RNLSNKRIFPAVNITASSTRRDDLLLDKTTLDRMWILRKYLADMNPIEAMDFVKDRLEKT
RDNDEFLMSMNS
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgtataacattatccaattaaacgacaaagatctgtcggaacttcaagttattgccaaa
gagttaggcataaaaaaaacagactcattaaaaaaggaagaccttgtttacaaaatactc
gatgaacaagcaatcgccggagccacaaagaaagttgccgcagacaagcttaaagaagaa
cgcaaagaagaacaaaagaaaaagcgttcacgcgtagcgcctgccaagaaagataacaaa
gtagtttccgcaaccaaggaaggagaagctgagaaagccaaagaagctgctcctgccaag
ccacaacagccttctaaaaaagaggaaagtgcaaataaagaaaaagagactcctgctgtt
gaagttaaagcagaaaataccgcagctcctaaacgtaaagtaggccgtccgcgtaaaaat
gccgatgcagcagagcaaaaagaagttgaaagcgtgaaaactgcaactccggcaactcct
aaagtaacggaagataaagtagttactgagaaagctcctgaagtaatagaaaaagcagtc
ccggcacaagctcccgaaaagaaaacaaaagccaacaaacctgctgaagagaagaaagta
gtagtgaaaccgcaaccgcaaaagaaagccgaacccgttatagacgaagaaagcaatatc
ttatccggtgccgacgacgatgattttattcctatcgaagatctgccttcagaaaagata
gaacttcccaccgaactttttggaaaattcgaagccaccaaaactgaaccggcacaaact
gctaccgaacaacaagcaccacagccacaacaacaggctcatcagcaacaacagcaacaa
cgtccacgcattgtccgtccgcgtgacaacaataatggcaataataatgctagcaatagt
aacaataacgccaataataataacaataataacttccaacgtaacaataaccaaaatcag
aaccagcagcgtgtaccgatgccgcgtcctgcccagccaaacaacgcgaacgaaaatctt
ccggtaccacaacagcagcaggaacgtaaagttattgagcgtgaaaagccttacgaattc
gatgacatccttaatggagtaggcgtactggaaattatgcaggatggatacggattcctc
cgttcttccgattataattacctttcttctcctgacgatatctatgtatcacagtcgcaa
atcaagttatttggcctgaaaaccggtgacgtggtagaaggagttatccgcccgcccaaa
gaaggagagaaatatttcccgttagtaaaggtatcgaagattaacggacgtgacgccgct
ttcgttcgcgaccgtgttcctttcgaacacctgacgccgcttttcccggatgaaaagttc
aaactctgcaaaggcggttattcggattccatgtctgcccgcgtagtagatcttttcgct
ccaatcggtaaaggtcaacgtgctttaatcgtagcccagcctaaaaccggtaagacaatt
ttaatgaaagacattgcaaatgccattgcagccaatcatccggaagtatacatgattatg
ttgcttatcgatgaacgtccggaagaagtaacagatatggcgcgcagcgtcaatgccgaa
gttatcgcttctacctttgatgaaccggcagagcgccacgtgaaaatcgcaggtatcgta
ttggaaaaagcaaaaagactggtagaatgcggccacgacgtagttatattccttgattct
attactcgtctggcacgtgcatacaacacagtatctcctgcatcgggcaaagtactttcc
ggtggtgtggatgcaaacgcacttcataagccgaaacgtttctttggtgctgcccgtaac
atcgagaacggtggttcactgacaatcatcgcaactgcattgattgataccggttctaaa
atggacgaagttatcttcgaagaattcaaaggtacaggtaacatggagttgcaactcgac
cgcaacctgtccaacaaacgtatcttcccggcagtcaacattaccgcatccagtactcgt
cgtgacgatctgttacttgataagacaactctcgaccgtatgtggattctccgtaaatat
cttgccgacatgaatccgatcgaagcaatggacttcgtaaaagaccgtctggaaaaaacc
agagacaacgatgaattcctgatgagcatgaacagctaa
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