Bergeyella cardium: DBX24_02165
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Entry
DBX24_02165 CDS
T06387
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bcad
Bergeyella cardium
Pathway
bcad03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bcad00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DBX24_02165 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bcad03021
]
DBX24_02165 (rpoC)
03400 DNA repair and recombination proteins [BR:
bcad03400
]
DBX24_02165 (rpoC)
Enzymes [BR:
bcad01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DBX24_02165 (rpoC)
Transcription machinery [BR:
bcad03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DBX24_02165 (rpoC)
DNA repair and recombination proteins [BR:
bcad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DBX24_02165 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
QHN64781
UniProt:
A0A6P1QVD3
LinkDB
All DBs
Position
complement(476208..480476)
Genome browser
AA seq
1422 aa
AA seq
DB search
MSNKNKSSRFNKITIGLASPESILQESRGEVLKPETINYRTHKPERDGLFCEKIFGPVKD
YECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERIGHINLVVPVAHIWYFRSLPNKIGYL
LGLPSKKLDMIIYYERYVVIQQGIAKKADGSDFEEMEFLTEEEYLDVLDSLPADNQYLDD
SDPNKFIAKMGAEAVEELLKRIDLDALSFDLRHKAHSEGSKQRRTEALKRLNVVEALRSA
NTRMINRPEWMVMRVLPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLLEIK
APEVILRNEKRMLQEAVDSLFDNTRKSSAVKSESNRPLKSLSDSLKGKQGRFRQNLLGKR
VDYSARSVIVVGPSLQLHECGLPKDMAAELYKPFIIRKLIERGIVKTVKSAKRIIDRKEP
VVYDILENVMKGHPVLLNRAPTLHRLGIQAFQPKMIEGKAIQLHPLVTTAFNADFDGDQM
AVHLPLGPEAILEAQLLMLGSQNILNPANGSPITVPSQDMVLGLYFMTKEGISTEEHKIK
GEGLAFYSPEEAEIAYNEGRASLNAKVKCKLPVKNEQGDFEIKLIETTVGRILFNQIVPK
QVGYVNELLTKKSLRNVIGKILAETDFPTTVKFLDDMKNLGYYNAFKGGLSFSLGDIVVP
EEKKQMIAKAVETVDEIKANYNMGLITDTERYNQVIDVWTNTNASLTEMIMQRMTTDQGG
FNSVYMMLDSGARGSKEQIRQLSGMRGLMAKPQKAGSVGAEIIENPIVANFKEGLSILEY
FISTHGARKGLADTALKTADAGYLTRRLVDVAQDVIITEDDCGTLRGVDVTPLKKNDEVV
EKLSERILGRVSLHDVYHPETDEIIVSADELIDEALAQKIEESGIESVEVRSPLTCEARR
GICAKCYGRNLATGKMIHMGEAVGVIAAQSIGEPGTQLTLRTFHQGGTAGNVSENPTIVA
KKDGIVELDEIRTITSEDENGNKVEIVVSRSTEFRLVADNAARTPLMVQNIPYGSILSVK
PGDKVKKGDLICKWDPYNAVIIAETAGKVAYEDIIQGVSFQLEIDEQTGFEEKVISEARG
KKAVPTLRVVDSKGVEQKSYNLPVGAHLMVNDGEKIKAGKILIKIPRKSAKAGDITGGLP
RVTELFEARNPSNPAVVTEIDGVVSYGKIKRGNRELIVEAKTGERKIYLVKLSSQILVQE
NDFVRAGTPLSDGSITPDDILRIQGPTAVQEYIVNEIQEVYRLQGVKIDDKHFEIIVRQM
MTKVEIVDGGDTRFLEAALEHKYDFLDENNRIFGLKVVVDAGDSKDFKPGQMITARELRD
ENSKLKREDLQLVEVRDALPATAVPVLQGITRAALQTRSFMSAASFQETTKVLNEAAVSG
KVDDLNGLKENVIVGHRIPAGTGLKDYQDFLVGLKKDFEDHN
NT seq
4269 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaataaaaataaatcaagcagatttaataaaatcaccattggtttggcttctcca
gaatctattcttcaagaatcaagaggagaggttctaaaaccagagactattaactaccgt
acgcacaagccagaaagagatggtcttttctgtgagaaaatctttggtcctgtaaaggat
tatgagtgtgcctgcggtaagtataagagaattcgttataaaggtatcgtttgcgaccgt
tgcggtgtagaggttaccgagaaaaaagtgcgtcgtgagagaattgggcatattaattta
gtagttccagtagctcacatttggtacttccgttctcttccgaataagattggctacctt
cttgggctgccttccaagaagttggatatgattatctattatgagaggtatgtagtcatc
cagcaaggtattgctaaaaaagcagatggctcagactttgaggaaatggagttccttacg
gaagaggaatatctcgatgtattagacagcctcccagcagacaatcaatatcttgatgat
tcagatcctaataagtttattgctaaaatgggagctgaagctgtggaagagctattgaag
agaatagacctcgatgcgctttcctttgatttgagacataaggctcacagcgaaggttct
aagcaaagaagaacagaagcccttaagcgtctgaatgtagtagaagcgcttagaagtgcg
aatacaagaatgataaaccgcccagagtggatggtaatgcgcgtacttcctgtaatcccg
ccagaattgagacctctcgttccattagatggtggtcgttttgctacttctgacctcaat
gacctttacagaagggttatcattagaaacaatcgtttgaaaagattattggaaatcaaa
gctccagaggtaatcttaagaaacgagaagcgtatgcttcaggaagcagtagattcctta
tttgataatacaagaaaatcttctgctgtaaaatctgaatctaacagaccacttaaatcc
ctttcagattcattgaaaggtaagcaagggcgtttccgtcagaacctcttaggtaagagg
gtagattactctgctcgttcggtaattgtcgttggtccaagccttcagcttcacgagtgt
ggtcttcctaaggatatggcagcagagctttacaaaccgtttatcatcagaaagctgata
gagagaggtatcgtaaaaaccgtaaaatctgcgaagagaatcatcgatagaaaagagcct
gtggtgtatgatattttggagaatgtgatgaaaggtcaccccgtactcctcaaccgtgcg
cctaccctccacagattgggtattcaggcattccagcctaagatgatcgaaggtaaggct
atccagcttcacccattggtaactactgcgtttaatgccgactttgacggtgaccagatg
gcggtacacttacctctcgggccagaggcaattttggaagctcaactgttgatgctcggt
tctcaaaacatcttgaacccggcaaatggttcgcctattaccgttccatctcaggatatg
gttctcgggctttactttatgaccaaagaaggtatctctaccgaagagcataagataaaa
ggtgaaggcttggcattctactccccagaagaagcagaaatcgcttataatgagggcagg
gcttcacttaatgcaaaagtaaaatgtaagctccctgtaaaaaatgaacaaggagatttt
gaaataaaacttattgaaactacggttggtagaattttatttaaccaaattgtacctaag
caggtaggttatgtaaatgagctgctgactaaaaaatcattgagaaatgttatcggtaaa
atcttagctgaaacagacttcccaaccacagtgaagttcctcgatgatatgaagaattta
ggttattataacgcattcaaaggtgggctttcattcagccttggagacatcgtagttcca
gaggagaaaaaacagatgattgccaaagcagttgaaactgttgatgagattaaggcaaac
tataatatgggtcttattacagatacagagcgttataaccaggtaattgatgtttggacg
aataccaatgccagccttaccgagatgattatgcagagaatgactaccgaccagggaggc
ttcaactctgtgtatatgatgcttgactctggggcgaggggttccaaagagcagattcgt
cagctctctggtatgcgtggtctgatggctaaacctcaaaaagcaggttccgtaggtgca
gagattatcgagaaccctatcgttgcaaactttaaggaaggtctttccatcttggaatac
tttatctctacccacggtgcgagaaaaggtctcgccgatacggcacttaaaactgccgat
gcgggttaccttacaagaagacttgtggatgtagcgcaggatgtcatcattacagaagat
gattgcggtacgctcagaggtgtagatgttactccattgaagaaaaatgatgaggttgta
gagaaactctctgaaagaatcttgggtagagtttcccttcacgatgtttatcatccagaa
accgatgagatcatcgttagtgcagatgaacttatcgatgaagcattggctcagaaaatt
gaagagtctggtattgagagtgtagaagttcgttcaccgcttacttgcgaggcaagaaga
ggtatctgtgcgaagtgctacggtagaaacctcgctactggtaagatgattcatatgggt
gaggcagtaggtgttatcgcagctcagtctattggtgagccaggtactcagcttaccctt
aggaccttccaccaagggggtactgcggggaatgtctctgaaaaccctactatcgttgct
aagaaagacggtatcgtagagcttgatgaaatcagaaccattacttcagaagacgaaaac
ggcaataaggtagaaatcgtagtttctcgttctacggaattccgtttggtagcagataat
gctgctcgtactccgcttatggttcagaatatcccttatggttccatactttctgtaaaa
ccaggcgataaagtgaaaaaaggagaccttatctgtaagtgggatccatataatgcggtt
atcattgcagagactgctggtaaggtagcttatgaagatattattcaaggggtttccttc
caattagagatagatgagcagacaggctttgaagaaaaagtaatctcagaagcaagaggt
aagaaagccgttcctacccttagagttgtagattccaaaggcgtagagcagaagtcttac
aacttacctgtgggtgctcacttgatggttaatgacggagagaaaatcaaagcagggaaa
atcctcatcaagattcctcgtaaatctgctaaggcaggggatatcacaggtggtcttccg
agggttaccgagctttttgaagcgagaaatccttccaatccagctgtggttaccgagata
gacggtgtagtttcttacggtaaaatcaagagaggaaaccgagagcttatcgtggaggca
aaaacaggtgaaagaaaaatttacctggtaaaactttccagccagattctcgttcaggag
aacgactttgtaagagcaggtactccgctttcagacggctccattacaccagacgatatc
ctcagaatccaagggccaacagccgttcaggagtatatcgttaatgaaatccaggaggta
tatcgtctccaaggggtgaaaattgatgacaaacactttgaaatcatcgtaagacagatg
atgacgaaggttgaaatcgtagatggtggagacacccgcttcctcgaagctgcccttgag
cataagtatgacttcctcgatgaaaacaaccgtatcttcggtcttaaagtagttgtagat
gcaggagattccaaagactttaaaccagggcagatgattaccgctcgcgagcttagagat
gagaactctaaactcaagagagaagatttacagctcgtagaagtgagagatgctctccct
gctactgctgtgcctgtgctccagggaattacccgtgcagcgcttcaaacaaggtcgttt
atgtctgccgcatccttccaggagactacgaaagttctcaacgaagctgctgtatctggt
aaggtagatgacctcaatggattgaaagaaaatgtaatcgtagggcatagaatccctgcg
ggaacaggtcttaaagactatcaggatttcctcgttggtcttaaaaaagactttgaagat
cacaactaa
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