Bergeyella cardium: DBX24_04230
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Entry
DBX24_04230 CDS
T06387
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bcad
Bergeyella cardium
Pathway
bcad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DBX24_04230 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcad03019
]
DBX24_04230 (rnr)
03016 Transfer RNA biogenesis [BR:
bcad03016
]
DBX24_04230 (rnr)
Enzymes [BR:
bcad01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DBX24_04230 (rnr)
Messenger RNA biogenesis [BR:
bcad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DBX24_04230 (rnr)
Transfer RNA biogenesis [BR:
bcad03016
]
Prokaryotic type
tRNA degradation factors
DBX24_04230 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
OB_RNR_1st
OB_HELZ2
S1CSD-TOTE-2
Rrp44_S1
Motif
Other DBs
NCBI-ProteinID:
QHN65159
UniProt:
A0A6P1QTN4
LinkDB
All DBs
Position
complement(914133..916286)
Genome browser
AA seq
717 aa
AA seq
DB search
MAKKRKYRSKKNDNKLKEIGRQIMRFLNQNTSKTYNYKQISDAIEHKNPRQREQVIQALH
LLRAQEKIKETEKGRYAANILIEATVEGIIDFNQSGNAYVNAEGIDEDIFIHSKNVKDAL
QGDKVLVVTYHYKGKRLEGSVLQVLERKKDSFVGTFEFIKHKEFGFVVGDKKTINTDIFI
AKSHFNGAQNGDKVVVRILKWEPQSKNPEGEIIRILGKPGEHETEIHSILADYGLPHDFP
EEVEQEAAHIDRSIKEEEVQKRRDMREVLTFTIDPKDAKDFDDALSLQKLENGNWEVGVH
IADVSHYVVPDSLLDEEAYHRATSVYLVDRVVPMLPEILSNDLCSLRPNEDKYTFSAVFE
LNDNAEIQKQWFGRTLIHSRRRFTYEEAQERIETQEGDLAEEILTLDRLAKILREKRIKD
GAITFDRSEVRFNLDENNEPIGVYFKMSKDANHLIEEFMLLANKKVSEFISLNQRKEPTH
KTFIYRIHDNPDPTKLEALRDFVSTFGYKMDISNPKNIAQSMNHLLKEVKGKGEENMIET
LAMRSMSKAKYSTEPIGHYGLGFDYYTHFTSPIRRYPDIIAHRLLQYYLDKGKSVDASEL
ESQCKHCSDMEMLASNAERESIKFMQVKFMEKHIGEVFTGIVSGVAEFGFWVEIPENGAE
GLIKLRDLMDDSYTYDPQTHSVIGSRTGNEYRLGDPVQIKVMKANLLQKQLDFKIIS
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaaaaagaaaatacagatcgaagaaaaatgataataaactgaaagaaatagga
aggcagattatgcgtttcctcaatcagaacacatcaaaaacctataattataaacaaatt
tccgatgcgatagagcataagaaccctcgccagagagagcaagtgatacaggcactgcac
ctattgagggctcaggagaaaatcaaggaaacagaaaaaggaagatatgctgcaaatatt
ctgatagaagctactgtagagggtattattgattttaatcagtcgggaaatgcttatgta
aatgcagaggggatagatgaggatatattcatccactctaaaaatgtaaaagatgccttg
cagggagacaaagtcttggttgtaacttatcattacaaaggcaagaggttagaaggctct
gttttgcaggtattagaacggaaaaaagactcattcgtcggtacttttgagtttattaaa
cataaggaatttggctttgtagtaggggataagaagaccattaatactgatatttttatt
gcaaagtctcattttaatggtgctcagaatggtgataaagtcgttgtaagaatcctaaaa
tgggagccgcaatccaaaaaccccgaaggtgaaatcatccgtattctcggtaagccaggc
gagcacgaaaccgagatacattccatacttgcagattatggtttgccacacgattttcca
gaagaagtagagcaggaagctgcgcatatagaccgctccataaaggaagaagaggtacaa
aagcgcagagatatgcgagaggtgctcacctttaccatagaccccaaagatgctaaggac
tttgatgatgccctctcccttcaaaagttggagaacggtaactgggaggtaggcgtacac
atcgcggatgtttctcactatgtggttcccgattcgctgttggacgaggaggcttaccac
cgcgctacctccgtctatcttgtggatagagttgttccaatgcttcccgaaatccttagc
aatgacctctgctcccttcgcccaaatgaagataaatacaccttctcggcggtatttgag
ttgaatgataatgctgaaatccagaaacaatggttcggcaggacgcttatacattcccgc
agaagatttacctacgaagaggctcaggagaggatagaaacccaggaaggagacctcgct
gaggagattcttacccttgaccgattggcaaaaatccttcgtgagaagagaataaaagat
ggagccatcacctttgaccgctcagaagttcgtttcaaccttgatgagaataacgagcct
atcggagtatattttaagatgagtaaagatgccaatcacctcatagaagagtttatgctc
ctcgccaataaaaaggtatcggagttcatctcccttaatcagagaaaagagcctacgcac
aagactttcatctatcgtattcacgataatcccgaccctactaagctcgaagccctcaga
gattttgtctctacttttggttataaaatggatatttcaaatcctaaaaatatagcccag
agtatgaatcatctgctcaaagaagtaaaaggcaaaggcgaggagaatatgatagaaacc
ctcgctatgcgctctatgagcaaggccaaatactccaccgagcccattgggcactacggt
ttgggctttgattattatacccacttcacatcgcccatccgccgatatccagacattatc
gcccatcggcttttgcagtattaccttgataaaggcaaaagcgtagatgcctccgagctg
gaaagccagtgcaaacactgctcagatatggagatgcttgcctctaatgccgagagagaa
agcataaaatttatgcaggtaaagtttatggaaaagcatatcggagaggttttcacaggg
attgtttctggtgtagcagagtttggcttctgggtagaaatcccagagaatggcgccgaa
ggactgataaaacttcgtgatttaatggatgattcctatacctacgacccacaaacccac
tccgtaataggctcccgaacaggaaatgagtaccggctcggagaccccgtacaaatcaaa
gtaatgaaagcaaatctcctccaaaaacagcttgactttaaaatcatttcttag
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