Bergeyella cardium: DBX24_06920
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Entry
DBX24_06920 CDS
T06387
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bcad
Bergeyella cardium
Pathway
bcad03030
DNA replication
bcad03430
Mismatch repair
bcad03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bcad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DBX24_06920 (dnaE)
03430 Mismatch repair
DBX24_06920 (dnaE)
03440 Homologous recombination
DBX24_06920 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bcad03032
]
DBX24_06920 (dnaE)
03400 DNA repair and recombination proteins [BR:
bcad03400
]
DBX24_06920 (dnaE)
Enzymes [BR:
bcad01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
DBX24_06920 (dnaE)
DNA replication proteins [BR:
bcad03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
DBX24_06920 (dnaE)
DNA repair and recombination proteins [BR:
bcad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
DBX24_06920 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
RNase_T
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
QHN65629
UniProt:
A0A6P1QUY3
LinkDB
All DBs
Position
1488593..1493212
Genome browser
AA seq
1539 aa
AA seq
DB search
MYLVFDTETTGLPQNFDAPISDSSNWPRMVQLAWQIHDENGKLIDNQDFIIKPEGYDIPF
NVSQIHGITTSIANEIGDDLETVLKHFAEAVEKCKFGVGQNIDFDYKIVGAEFYRKGIAD
KLQALPKADTMWLGTQFTAIPQGNTGRLKPPKLEELYEKLYGFKFDEAHNAAADVNATAQ
VFFEMLRRGIISAADLGVEESVISHFQSLHTEPIKPFPIVIRSQIAEFNKRKQGASQTAQ
EMDLGSYFNFHNHSIFSSLQASTHHSDMVNKALKNDFPAVGMVDFGNLMGAFKFVNEVEK
ANGDLKKKHQEFIDNHPDETPPPLKQLIPIIGCEFYISDRPEQKQFTKDDPDRRTNIVLL
AKNFRGYKNIAKLSSLGFVNGFYFGVPRVSKEWILQHKEDVIALSSGLNGDIPNAVLEYG
ETKGEQVFKWWKDAFGEDFYVQIQNHGLAEEEYLNDILLRWAEKYDVKVLAQNETYYTSK
EDAHIQEILFCIKDGEKLSTPVGRGFGKRKGLPSKDYDMKDREEIKRAFSHYPTAFKAYE
DFLKKFEPYALKREVLLPKFEIPEQFQSEEDEKDGGKRGENAFLRHLTYEGAKRRYEEIT
DEIRERLDFELEIIANTGYPGYFLIVQDFCNEARNMGVWVGPGRGSAAGSAVAYCIGITN
VDPIKYDLLFERFLNPERISMPDIDIDFDDEGRDKIIKWVVEKYGKMNVAQIITYSVLGG
KSAITDAGRVLEYSIPDTKGIAKLVPPAPGMNIAKAFKKYEKLPPEDKILVDEMKTILDN
KKDARFPVLSAAQKMEGCIRNTGIHACGVIITPEDISNLVPITTAAKDSDVLVSQFDNSV
AEAAGLLKMDFLGLRTLSIIRDAIKLIKDNYDIDINPDEISLEDEKTYQLFQEGRTIGIF
QYESVGMQKYMRELKPTVFADLIAMNALYRPGPIKYIPNFINRKHGIEEIVYDLPETEEY
LKETYGITVYQEQVMLLSQKLANFTKGEADTLRKAMGKKQIDVLNKMYPKFIEGGKKNNL
NEEKLEKIWNDWKAFAEYAFNKSHSTCYAYIAYQTAYLKANYPAEYMASVMTHNLNNTKQ
ITMFMEDCKAMGVDVLGPDVNESQYEFSVNDKGQIRFGLGAIKGIGEGPSEIIVETRQQG
KFKDIYDFFERIPASQINKRVVESLVVAGAFDEVDEYHRAQYFQEDNANRTTIERLLKYG
QSFQESRNEMENSLFADFAEEVQIEQPKIAPAPEWQNMHKLNREKEIIGFYLSSHPLDEF
KYQYQFIQGLLSKKEVVETKNTDEEFLDKAQPAYNESQEEADDTLTDELIDIEMGDAEEP
VENAAKVIEARGKFRFLNLDELDAYRDKNFGAEQLKLFETVDYKTKQAMNTAVRENMVAG
LVTEYLIRDGRNSGEKVAFVTLEDYSGSYSFRLGDRDYLRLKDKIDLQRFLIFKVKYSMS
KDGRVYLNVVDVMELKDAFERFANSLSVVVDIQDFRQEDLEFLSKVIQENFGDKKLRFYL
RNKENNSHLELNTIRPSIKIDGDFIKFFVENNKFQFYLN
NT seq
4620 nt
NT seq
+upstream
nt +downstream
nt
atgtatttagtttttgataccgaaactacaggcttaccccaaaattttgatgcaccgatt
tccgattcttccaactggccgagaatggtgcagctcgcttggcaaatccacgatgaaaac
ggcaaacttatagacaaccaagacttcattatcaagcccgaaggctacgatataccgttt
aatgtctcgcaaatacacgggattacgaccagtattgccaatgaaattggtgatgacttg
gagaccgtcctcaagcactttgctgaggcggttgagaagtgtaaattcggtgtggggcag
aacattgattttgattataagattgtaggagcagaattttaccgaaaaggaattgctgat
aagttgcaagccctcccaaaagccgatactatgtggcttggtacgcagtttaccgcgatt
cctcaagggaatacaggcaggctcaagcccccaaaactcgaggaactctatgagaagctc
tatggttttaagtttgatgaagcccacaatgccgcagccgatgtaaatgctacggcacaa
gtattctttgagatgcttaggcgggggattatcagtgcggctgatctcggtgtggaggag
agtgttatttcacatttccaaagtctgcataccgaacccataaagcctttccctatcgtt
attcgaagccagatagcagaatttaacaagagaaaacagggtgcttcccaaaccgcacag
gagatggatttggggagttatttcaattttcataatcacagtattttttcctccctccag
gcctctacccaccattccgatatggtaaataaagccttgaagaatgattttcctgctgtg
gggatggtagattttggcaatttgatgggtgcctttaagttcgttaatgaagtcgagaaa
gccaatggagacttaaagaaaaagcatcaggaattcatagataatcatccagatgaaacc
cctccaccgctaaaacagctcattcccattatcggatgtgagttttatatctcagacaga
ccagaacaaaagcagtttaccaaagatgaccccgaccgcaggacgaatatagtcctcctt
gccaagaatttccgagggtataagaatattgcaaaactctccagccttgggtttgttaat
ggtttttacttcggtgtacctcgggtttcaaaagaatggattcttcagcataaggaagat
gtaattgccctttcttcagggcttaatggcgatatacccaatgctgttttagaatatgga
gagaccaaaggcgagcaagtattcaaatggtggaaggatgcttttggagaggacttctat
gtacagatccaaaaccacggcttggccgaagaagagtatctgaatgatatcctcctccgc
tgggcagagaaatatgatgtgaaagttctggctcagaatgagacttattatacctccaaa
gaggatgcacacatacaggaaattttattttgtataaaagacggtgaaaagctctccact
cctgttggtagaggctttggtaagaggaaaggcttaccctcaaaagactacgatatgaaa
gaccgtgaggagataaagcgggcgtttagccattatcccaccgcttttaaggcgtatgag
gactttctcaaaaagtttgagccttatgccttgaagagagaggttctcctccccaagttt
gagattcctgagcagtttcagtccgaagaagatgaaaaagacggaggcaagcgaggagaa
aatgctttcctaagacatcttacctacgaaggagccaagagaagatatgaggaaatcacc
gatgagattcgagagaggttagactttgagctggaaatcattgccaatacaggctatcct
gggtacttcctcattgtgcaggacttttgtaatgaagcccgcaatatgggcgtatgggta
ggtcctgggcgaggttcggcagcaggctcggcagtggcatactgtataggaattacgaat
gtagatcctattaaatacgacctcctctttgagcgttttctcaatcctgagagaatctca
atgcccgatatagatatagactttgatgatgaagggagagacaagattattaaatgggta
gtagaaaagtatggcaagatgaatgtggcacagattattacctattctgttctcggtggt
aagtcggcaattaccgatgctggtcgtgttcttgaatattccattccagatacgaaaggc
attgcgaaactcgtgcctccagcaccagggatgaatatcgctaaggcattcaaaaaatat
gaaaagctccctccagaagataaaatactggtagatgagatgaaaaccatcttagacaat
aagaaagatgcacgattcccagtgctctctgctgctcagaagatggagggatgcattaga
aatacgggaatacatgcctgcggggttatcattactccagaagatatttccaacctcgtc
cctattaccactgcggctaaggattccgatgtgctggtctctcaatttgataattcagta
gctgaagcagcaggacttttaaagatggatttcctcgggcttagaactttatccattatc
cgtgatgcgattaaactcattaaagataattatgatatagatataaatccagatgagatt
tcactggaagatgagaagacttatcagctctttcaagagggtaggacaatagggattttc
caatacgaaagtgtgggaatgcaaaagtatatgcgggagctgaaacccaccgtatttgcc
gaccttattgcgatgaatgccctctaccgaccaggtccaatcaagtatatcccaaacttt
atcaacaggaaacacggcatagaagagattgtgtatgacctgcccgaaaccgaagagtat
ttaaaggaaacctacggaattacggtttatcaagagcaagtaatgctactctctcagaag
ctggcaaactttacaaaaggtgaagccgatacactcagaaaggcaatggggaaaaagcag
atagatgtcctcaataaaatgtatcccaagtttatagaaggaggaaagaagaacaatctg
aatgaggaaaaactcgagaagatttggaacgactggaaagcctttgcagaatacgccttt
aataagtctcactccacctgttatgcctatattgcctatcaaacagcctatctgaaagca
aattatcctgcggaatatatggcaagtgtgatgacgcataacctgaataacacaaagcaa
atcacaatgtttatggaggactgcaaagcgatgggggtagatgtactcgggccagatgta
aacgaaagtcagtatgagttttccgtaaatgataaggggcagattcgctttggtctggga
gcaatcaagggaataggtgagggaccgagcgaaattatcgtagagacccgccagcaaggt
aagtttaaagatatatatgacttctttgaacgcataccagcctctcagattaataaaaga
gtggtggagagtttagtggtagcaggagcttttgatgaggtagatgaataccaccgtgcg
cagtacttccaagaagataatgcgaatagaaccaccatagaaagactccttaaatacgga
caatccttccaagaaagcagaaatgaaatggaaaactccctctttgcagactttgctgaa
gaggtacagatagagcaacccaagatagcacctgctccagaatggcaaaatatgcacaaa
ctcaatcgtgagaaggagattatcggcttttacctttcatctcatccgttagatgagttt
aaatatcagtatcaattcattcaaggattgctaagtaaaaaggaagtggtagaaactaaa
aatacagacgaagaatttctcgacaaagctcagccagcatacaatgaaagccaggaagaa
gcagatgataccctcacagatgagcttatagatattgaaatgggcgatgctgaagaacca
gtggagaatgcggccaaagtaatagaggcaagaggcaagttcagattcttaaatctcgat
gagttggatgcctatcgcgataaaaatttcggggcggagcagctgaaactctttgaaacc
gtagattataagaccaagcaggcgatgaataccgctgtgcgcgaaaatatggtcgcagga
ctcgttaccgaatacctcatacgagacggaagaaactcgggagagaaagttgcttttgta
acactggaagattattcggggagctattctttccgtttgggtgacagggattatctccgc
ctcaaagacaaaatagacctccaaaggttccttattttcaaagtgaagtactcaatgtcc
aaagacggcagagtatacctcaatgtagtagatgtaatggagcttaaggacgcttttgag
cgctttgctaacagcctttccgttgtagtagatatacaagatttcaggcaagaagacttg
gaattcctctccaaagtgatacaagagaatttcggtgataaaaagctcagattctacctc
agaaataaggagaataactcccatctcgagctcaataccataaggccgagcattaaaata
gatggagacttcatcaagttctttgttgaaaacaacaaattccagttttatctcaactaa
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