Bergeyella cardium: DBX24_08055
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Entry
DBX24_08055 CDS
T06387
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bcad
Bergeyella cardium
Pathway
bcad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DBX24_08055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcad03019
]
DBX24_08055
03009 Ribosome biogenesis [BR:
bcad03009
]
DBX24_08055
Enzymes [BR:
bcad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DBX24_08055
Messenger RNA biogenesis [BR:
bcad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DBX24_08055
Ribosome biogenesis [BR:
bcad03009
]
Prokaryotic type
rRNA helicases
DBX24_08055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QHN65834
UniProt:
A0A6P1QYS6
LinkDB
All DBs
Position
complement(1758156..1759790)
Genome browser
AA seq
544 aa
AA seq
DB search
MNLFTESNLSPEIIKAVGELGYEQPTEIQKLTIPFILSDIRDLIALAATGTGKTAAFSLP
ILDMIDDASRKIQLLVLCPTRELCLQITKDIKNYTKYLPNLKTVAVYGGSSIVDQMRSLK
EKPQIIVGTPGRVIDLIKRKSLDFSAIHWLVLDEADEMLSMGFKDDLETILSETPDEKQT
LLFSATMNKEVEKISKNYLTNPHKISVGSINAVKKNISHEYYVVTYRQKKEALKRLIDAN
PNQYSIIFCRTRAETQDVADFLMQNGYAADALHGDLSQAQRDIVMKKFRLKNLEILVATD
VAARGLDVDSLTHVIHYSLPDDPEVFVHRSGRTGRAGKDGISMALIKPDETRKLKQIKSQ
TKIEIVEKQIPKGDIIIKAQVAGVFDKLLTKHEDYFDFDNSLIPDLSQFTKEELVHQLLQ
FQLKDMALYYQNRNDLSSQQLSDEAEPSGRRDRKRGRDQKKRNSADMVRFFFNLGKRDRL
RKVDMLDIINKATAKSKKRADIGDIEILDKFTFFEVEKDFKNEVLSNISFMKFKGKEMRA
EVAN
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatttacggaatccaacctcagccctgaaatcatcaaggcggttggcgaactc
ggctacgaacagccgacagaaatccagaaactgactattccttttattctctctgatatt
cgcgatttaatcgctcttgcggctacgggaacaggcaaaacagcagcattttcgcttccg
attctggatatgatagacgacgcgagtcgtaaaatccagcttttggtgctctgccctact
cgtgagctttgcctccagattaccaaagacattaaaaactatacgaaatacctcccaaat
ctaaaaactgttgcagtttatggggggagcagtattgtagatcagatgcgctccttaaag
gagaaacctcagattatcgtaggtacccctgggcgagttatagaccttattaagagaaaa
tctcttgatttctctgcgatacattggctcgttctcgacgaagccgatgagatgctctct
atgggctttaaggatgaccttgaaaccatactcagcgaaacaccagacgagaaacaaacc
ctgctcttctctgctacgatgaataaggaagtagaaaaaatctctaaaaactaccttaca
aatccgcacaagatttccgtaggttctattaatgcagtgaagaagaatatctcccacgag
tattatgtagtaacctaccgacagaagaaagaagccctcaaaaggctgatagatgctaac
cccaaccagtactctattatcttctgccgaacgagagcagaaactcaggatgtggctgac
ttccttatgcaaaacggctatgctgccgatgcattgcacggagacctctcccaagcacaa
agggatattgtgatgaagaaattcaggcttaaaaaccttgaaatccttgtagctactgat
gttgctgccagagggctggatgtagattccctcactcatgtaatccactactctctaccc
gatgacccagaagtattcgtacaccgaagtggtagaacggggcgtgcaggtaaagacggt
atctctatggcactcataaaaccagacgagactcgaaaactgaaacaaataaaatctcaa
accaagatagaaatcgtagagaagcaaatcccgaaaggagatatcatcatcaaagcacaa
gtggcaggcgtatttgataaactcctcaccaaacacgaggattattttgactttgataac
agcctcattcccgacctctctcagttcacaaaagaggaattggttcatcagctccttcaa
ttccaactgaaagatatggcactctactatcagaatagaaacgacctttcttctcagcaa
ctctctgatgaagccgaaccatctggcagaagagacagaaaacgcggacgagaccaaaag
aaaagaaacagcgcagatatggtacgcttcttcttcaatctcgggaaaagagacagactg
agaaaagtagatatgctggacatcatcaataaagcaacggctaagtctaaaaaacgggca
gacattggcgatattgaaatccttgataaatttaccttctttgaagtagaaaaagatttc
aaaaacgaagttctaagcaatatctcctttatgaaattcaaaggaaaagaaatgcgcgcc
gaagtggcaaattaa
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