Bacteroides caecimuris: A4V03_12065
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Entry
A4V03_12065 CDS
T05202
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
bcae
Bacteroides caecimuris
Pathway
bcae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A4V03_12065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bcae03021
]
A4V03_12065
03019 Messenger RNA biogenesis [BR:
bcae03019
]
A4V03_12065
Transcription machinery [BR:
bcae03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
A4V03_12065
Messenger RNA biogenesis [BR:
bcae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
A4V03_12065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA
OB_RNB
AT_hook
Motif
Other DBs
NCBI-ProteinID:
ANU58210
UniProt:
A0A1C7H324
LinkDB
All DBs
Position
2829621..2831840
Genome browser
AA seq
739 aa
AA seq
DB search
MYNIIQLNDKNLSELQAIAKELGIKKADSYKKEDLVYKILDEQAIVGATKKVAADKLKEE
RKNEEQKKKRLRVAPAKKEDKVVSATKNGEVTKTKEAIPVKAQQPSKKEESTNKDKEAPV
VEAKSENATTAPKRKVGRPRKNADAEEKKEVENAKLAAPKAVETGSVVAEKTTETTEKTA
PVQQPTAEKKAKSKPVAEINKPAADPNKPVAEKKNIDKPQKKTALVIDEESNILSSVDDD
DFIPIEDLPSEKIELPTELFGKFEATKTEPVQTAPEQPSHPQQQQQPQQQQAQQQRPRIV
RPRDNNNGNNNANNNNANNNFQRNNNNQNQQRLPMPRATQQNHASDNLPAQQQQERKVIE
REKPYEFDDILNGVGVLEIMQDGYGFLRSSDYNYLSSPDDIYVSQSQIKLFGLKTGDVVE
GVIRPPKEGEKYFPLVKVSKINGRDAAFVRDRVPFEHLTPLFPDEKFKLCKGGYSDSMSA
RVVDLFAPIGKGQRALIVAQPKTGKTILMKDIANAIAANHPEVYMIMLLIDERPEEVTDM
ARSVNAEVIASTFDEPAERHVKIAGIVLEKAKRLVECGHDVVIFLDSITRLARAYNTVSP
ASGKVLSGGVDANALHKPKRFFGAARNIENGGSLTIIATALIDTGSKMDEVIFEEFKGTG
NMELQLDRNLSNKRIFPAVNITASSTRRDDLLLDRTTLDRMWILRKYLADMNPIEAMDFV
KDRLDKTRDNDEFLMSMNS
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgtataacattatccaattaaacgacaaaaatctgtcggaacttcaagctattgccaaa
gagttaggcataaaaaaagcagactcatacaaaaaagaagacctcgtttataaaatactt
gatgaacaggctattgtaggagctactaagaaagttgccgcagataaactcaaagaagaa
cgcaaaaatgaagaacaaaagaaaaagcgtttacgggtagctcctgccaaaaaagaagac
aaggtagtttccgcaacaaagaatggagaggttactaaaaccaaagaagccattcctgta
aaagcacaacaaccttccaagaaagaagaaagtacaaacaaagataaagaagctcctgtt
gtagaagctaaatcagaaaacgctactactgctcccaagcgtaaagtgggacgtccacgt
aagaacgctgacgcagaagagaagaaagaagtagaaaatgcaaaactggctgctcccaaa
gcggtggaaactgggtctgttgttgcagagaaaactactgaaacaacagaaaaaactgct
ccagtacaacagccgactgctgagaagaaagcaaaaagcaaaccagttgcagaaataaat
aaaccagccgcagaccccaacaagcctgttgcagagaaaaaaaatatagataaaccacaa
aagaaaactgcacttgttatcgacgaggaaagcaatatcttatccagcgttgacgatgat
gattttattccaatcgaagatctgccttctgaaaaaatagagcttcctaccgaactcttc
ggcaaattcgaagcaactaaaacagaacctgtacaaacagcacccgaacaaccatctcat
cctcaacagcagcaacaacctcaacagcagcaagcgcaacaacaacgcccgcgtattgtc
cgtccacgcgacaataacaacggtaataacaatgctaataacaataacgctaataataat
ttccagcgtaacaacaataatcaaaaccaacagcgcttaccgatgccgcgtgccactcaa
cagaaccatgcgagcgataatcttccggcacaacagcagcaggagcgcaaggttattgaa
cgcgaaaagccttacgaatttgatgatattctcaacggagtaggcgttttggaaattatg
caggatggatacggattcctccgttcttccgattataactacctttcttctccggacgat
atttatgtatcacagtctcaaatcaaactatttggtttgaaaaccggtgatgtagtggaa
ggtgttatccgtcctcccaaagaaggagaaaaatatttcccattggtaaaggtttcgaaa
atcaacggacgtgacgcagctttcgttcgcgaccgtgttcctttcgaacatctgacacct
ctcttcccggatgaaaagttcaaactttgcaaaggcggttattcagactctatgtctgca
cgcgtcgttgatcttttcgctcctatcggtaaaggacagcgcgctttgatcgtcgcccaa
ccaaagacaggtaagactatcttaatgaaagatatcgctaacgccatcgcagccaatcac
ccggaagtctacatgattatgttgctgattgacgaacgtccggaagaagtaaccgatatg
gcacgtagcgtgaatgcagaagttatcgcttctactttcgacgaaccggcagaacgtcac
gtgaaaattgcaggtattgtattggaaaaagcaaaacgtttggtagaatgtggtcacgac
gtagtgatcttccttgattctatcacccgtctggcccgtgcatacaatacagtatctcct
gcatccggtaaagttctttccggtggtgtggatgcaaatgcacttcataaacctaaacgt
ttcttcggtgctgcccgtaatattgaaaacggcggctcgttgaccatcatcgctaccgca
ttgatcgataccggttctaaaatggacgaagttatcttcgaagaatttaagggtaccggt
aacatggagttgcagctcgaccgcaacctgtctaacaaacgtatcttcccggcagtcaac
attactgcatccagcactcgtcgcgacgacctgttgcttgataggacaactcttgaccgc
atgtggatattacgtaaatatcttgcagacatgaatccaatcgaagcaatggacttcgtt
aaagaccgtttggacaagaccagagataacgatgaattcctgatgagcatgaacagctaa
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