Bacteroides caecimuris: A4V03_16375
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Entry
A4V03_16375 CDS
T05202
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bcae
Bacteroides caecimuris
Pathway
bcae03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bcae00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
A4V03_16375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bcae03021
]
A4V03_16375
03400 DNA repair and recombination proteins [BR:
bcae03400
]
A4V03_16375
Enzymes [BR:
bcae01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
A4V03_16375
Transcription machinery [BR:
bcae03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
A4V03_16375
DNA repair and recombination proteins [BR:
bcae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
A4V03_16375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
ANU58932
UniProt:
A0A1C7H502
LinkDB
All DBs
Position
complement(3857686..3861498)
Genome browser
AA seq
1270 aa
AA seq
DB search
MSSNTVNQRVNFASTKNPLEYPDFLEVQLKSFQDFLQLDTPPEKRKNEGLYKVFAENFPI
ADTRNNFVLEFLDYYIDPPRYTIDDCIERGLTYSVPLKAKLKLYCTDPDHEDFDTVIQDV
FLGPIPYMTDKATFVINGAERVVVSQLHRSPGVFFGQSVHANGTKLYSARIIPFKGSWIE
FATDINNVMYAYIDRKKKLPVTTLLRAIGFENDKDILEIFNLAEDVKVNKTNLKKVLGRK
LAARVLKTWIEDFVDEDTGEVVSIERNEVIIDRETVLEEEHIDEILESGVQNILLHKDEP
NQSDFSIIYNTLQKDPSNSEKEAVLYIYRQLRNADPADDASAREVINNLFFSEKRYDLGD
VGRYRINKKLNLTTDMDVRVLTKEDIIEIIKYLIELINSKADVDDIDHLSNRRVRTVGEQ
LSNQFAVGLARMSRTIRERMNVRDNEVFTPIDLINAKTISSVINSFFGTNALSQFMDQTN
PLAEITHKRRMSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVFA
KINELGFIETPYRKVENGKVDLSDNGLIYLTAEEEEEKIIAQGNAPLNDDGTFVLNRVKS
RQDADFPVVEPSEVDLMDVAPQQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLLRSE
APIVGTGIERQLVRDSRTQITAEGDGVVDYVDATTIRILYDRTEDEEFVSFEPALKEYRI
PKFRKTNQNMTIDLRPICDKGQRVKKGDILTEGYSTEKGELALGKNLLVAYMPWKGYNYE
DAIVLNERVVREDLLTSVHVEEYSLEVRETKRGMEELTSDIPNVSEEATKDLDENGIVRI
GARIEPGDIMIGKITPKGESDPSPEEKLLRAIFGDKAGDVKDASLKASPSLKGVVIDKKL
FSRVIKNRSSKLADKALLPKIDDEFESKVADLKRILVKKLMTLTEGKVSQGVKDYLGAEV
IAKGSKFSASDFDSLDFTSIQLSNWTSDDHINGMIRDLVMNFIKKYKELDAELKRKKFAI
TIGDELPAGIIQMAKVYIAKKRKIGVGDKMAGRHGNKGIVSRVVRQEDMPFLADGTPVDI
VLNPLGVPSRMNIGQIFEAVLGRAGKTLGVKFATPIFDGATMEDLDHWTDKAGLPRYCKT
YLCDGGTGEQFDQAATVGVTYMLKLGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRF
GEMEVWALEGFGAAHILQEILTIKSDDVVGRSKAYEAIVKGEPMPQPGIPESLNVLLHEL
RGLGLSINLE
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcaaatactgtaaatcaaagagttaattttgcttcgactaagaatccgctagaa
tacccggatttcctggaagtacaattgaagtcattccaagactttctacaattagatacc
ccacctgaaaagcgtaagaatgagggattgtataaagtatttgctgaaaacttccctatt
gccgatacaagaaacaattttgttcttgagtttctggactattatattgatccgccgcgc
tatactattgatgattgtatagagcgtgggctcacttatagcgttcccttaaaagcgaaa
cttaagctttactgtacggaccccgatcatgaggattttgatacagtgattcaggacgta
ttcctcggccctattccttacatgactgataaggctactttcgtcattaatggtgccgaa
cgcgtagttgtgtcacagcttcaccgttctccgggtgtgttcttcggtcagagtgtacat
gccaatggtacgaaactttattcggctcgtattattccgtttaaaggttcgtggattgag
tttgctactgacatcaataatgtgatgtacgcatacatcgaccgtaagaagaaattgccg
gtaactacattgttacgtgcaattggcttcgagaatgacaaagatattcttgagattttc
aaccttgcagaggatgtgaaggtaaacaagacaaatctgaagaaggtgttaggccgtaaa
ttggcagcacgtgtcttgaaaacatggattgaagatttcgttgatgaagataccggtgaa
gtggtttctattgaacgtaacgaagttattatcgaccgtgaaaccgtactggaagaggag
catattgatgaaattttggagtcgggagttcagaatatccttttgcataaggatgaaccg
aatcagtccgatttctctatcatatataatacgttgcagaaggacccgagtaactcggaa
aaagaagctgtgttgtatatctaccgtcagttgcgtaatgctgatccggctgatgacgcg
agtgcaagggaggttatcaacaacttgttcttctcagaaaaacgatatgaccttggtgat
gtaggtcgatacagaatcaataagaagttgaatctgacgactgatatggacgtgcgtgtc
ctcacgaaggaagatattattgaaatcatcaaatatctgattgagttgattaactcaaaa
gcggatgtagatgatattgaccacttgagtaaccgtcgtgtacgtactgttggtgaacag
ctttctaatcagtttgctgtggggctggctcgtatgtctcgtacgattcgtgaacgtatg
aacgttcgtgacaatgaagtgtttactccgattgatttgattaatgcgaagactatttct
tcagtaatcaactcattcttcggaacgaatgcgttgtcgcagttcatggatcagacaaac
ccactggctgaaattacgcacaaacgtcgtatgtctgctcttggtcctggtggtctttcc
cgtgaacgtgccggatttgaggttcgtgacgttcactacacacactatggtcgtctttgt
ccgattgagactcctgaaggtccgaatatcggtttgatttcttcattgtgtgtatttgct
aagattaatgaactaggattcattgaaactccctaccgtaaggtagaaaatggaaaagtg
gatctttctgataacggtctgatttatttgactgctgaagaagaggaagaaaagattatt
gcgcagggaaatgctccgttgaatgacgatggtacctttgttcttaacagagtcaagtct
cgtcaggatgcagattttccggttgtagaaccatctgaagttgatttgatggatgttgct
cctcagcaaattgcatctattgcagcttctttgattccattcttggaacatgatgatgct
aaccgtgcattgatgggatcgaatatgatgcgccaggcagttcctttgttgagaagtgaa
gcaccgattgttggtacaggtatcgaacgtcagttggtaagagactctcgtacgcaaatt
actgcagaaggtgacggtgtagttgattatgtggatgctactactatccgtattttgtat
gaccgtacggaagacgaagaatttgtaagtttcgaacctgctttgaaggaatatagaata
cctaagttccgtaagaccaaccagaacatgacaattgacttgcgtccgatttgcgataag
ggtcagcgcgtgaagaaaggtgatatcttgactgaaggttattctaccgaaaaaggtgaa
ttggcattgggtaagaacctgttggtggcttacatgccttggaagggttacaactatgag
gatgccatcgtattgaacgaacgtgtggtacgtgaagacttgttgacttcggttcacgta
gaggaatattctctggaagttcgtgaaacaaagcgtggtatggaagagttgacttctgat
atcccgaatgtaagtgaagaagctaccaaagacttggatgaaaacggtatcgtaagaatc
ggtgctcgtatcgaaccgggtgatatcatgattggtaagattacgccaaagggtgaatct
gatccttctccggaagaaaaattgcttcgtgctatcttcggtgataaggcaggtgacgtg
aaagatgcttctttgaaagcttctccttctttgaaaggtgttgtgattgataagaaactt
ttctcacgtgtgattaagaatcgtagctctaaactggctgataaagcattgttgcctaag
attgatgacgaatttgaatctaaggtagctgacttgaaacgtatcttggttaagaaactg
atgactttgactgaaggtaaggtttctcaaggtgtgaaagactatttgggtgcagaagtt
attgcgaaaggttctaagttcagtgcttctgattttgattcactagactttacttctatt
cagttgagtaactggacgagtgacgatcatattaatggtatgattcgtgatctggtgatg
aatttcattaagaaatacaaagagctggatgctgaattgaaacgtaagaagtttgctatt
acgattggtgatgaacttcctgctggtattatccagatggcaaaagtatatattgctaag
aaacgtaagattggtgtgggtgataagatggccggtcgtcacggtaacaagggtattgta
tcccgtgttgttcgtcaggaggatatgccattcttggccgatggtactccggttgacatc
gtattgaatccgttgggtgtgccttctcgtatgaacattggtcagatttttgaagctgta
cttggacgtgccggaaagactttgggtgtgaaatttgcgactcctattttcgacggtgct
accatggaagatctggatcactggacagacaaggcaggattgcctcgttactgtaaaact
tatctttgcgatggtggtacaggtgaacaatttgaccaggcagctactgtgggggtaact
tatatgttgaagttaggccacatggttgaagacaagatgcatgctcgttctatcggtccg
tactcattgattactcagcaacctcttggtggtaaagctcagttcggtggtcagcgtttc
ggagaaatggaggtttgggcactcgaaggttttggagcagctcatatcctgcaggaaatc
ctgactatcaaatccgatgacgtagtaggacgttcgaaggcttatgaagcaattgtgaaa
ggtgaaccgatgccacaaccaggtattccggaatccttgaacgtattgttacacgagttg
agaggtttaggtttgagtatcaacctagaataa
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integrated database retrieval system
