Bacteroides caecimuris: A4V03_18780
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Entry
A4V03_18780 CDS
T05202
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bcae
Bacteroides caecimuris
Pathway
bcae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A4V03_18780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcae03019
]
A4V03_18780
03009 Ribosome biogenesis [BR:
bcae03009
]
A4V03_18780
Enzymes [BR:
bcae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A4V03_18780
Messenger RNA biogenesis [BR:
bcae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A4V03_18780
Ribosome biogenesis [BR:
bcae03009
]
Prokaryotic type
rRNA helicases
A4V03_18780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Ig_Tie2_1
Motif
Other DBs
NCBI-ProteinID:
ANU59359
UniProt:
A0A1C7H480
LinkDB
All DBs
Position
complement(4458519..4460450)
Genome browser
AA seq
643 aa
AA seq
DB search
MKTFEELGVSPEIRKAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLP
LLQQIDVKNRIPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSLK
RGVHIIVATPGRLLDLMERKTVSLSTIRNVVMDEADEMLNMGFTDSINAILADVPQERNT
LLFSATMSPEIARISKNYLRNAKEITIGRKNESTNNVKHVVYTVQAKDKYEALKRIVDYY
PQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRIRNLQLLVATD
VAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKLREIERI
IGKKFITGEMPTAAGICQKQLIKVIDDLEKVKVNEEEIAGFMPEIYRKLEWLSKEDLIKR
VVSHEFNRFAEYYRHRPEIEQPTIESRSERARKGDRKENGFEKRSRKAAPGFNRLFINLG
KTDSFFPSDLIGLLNSNTRGRIELGRIDLMQNFSFFEVPEKETVNVLKALNRAKWNGRKV
VVEVSSEEGGKGHENGSGERKGGKRSGKNEERAPRYENKDRKSKDASAKGSKSSKKEKPS
RAERGYSDARGPKRKDNWQEFFKDKEPDFSEEGWARRKPKKQL
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgaagacatttgaagagcttggcgtttctccggagatacgtaaagcaattgaagaaatg
ggatacgagaatcccatgccggtacaagaggaagtgattccgtaccttttaggagaaaat
aatgatgtagtagctcttgcacagacaggaacaggtaaaacagccgcattcggtttgcct
ctgctccaacaaattgacgtaaagaacagaatcccacaatcgctgatcctctgccctacc
cgtgagctttgtctccaaatagcaggagatctgaacgactattccaaatacattgatgga
ctaaaagtactgcctgtatatggaggttcttccattgacagccagatacgcagcctgaaa
cgaggcgtacatatcatcgtagccactcctggacgtttgctggacttgatggaacgcaag
accgtttccctatccaccatccgcaacgttgtaatggacgaagcagacgagatgctgaac
atgggatttacagatagcattaacgctattctggctgatgtaccgcaagaacgtaacaca
ctgcttttctccgctactatgagcccggaaattgcacgtatctccaaaaactatttacgt
aacgcgaaagaaatcactattggccgtaagaacgaaagtaccaacaacgttaaacacgta
gtttataccgtacaagcgaaagataaatacgaggctttaaaacgcattgtcgactattac
ccgcaaatatacggtattattttctgccgtacccgcaaggaaacacaggaaattgctgac
aaattaatgcaagaaggctataatgccgactcgctgcatggcgaactttcacaagcacaa
cgagacactgtcatgcaaaagttccgtattcgtaatctgcagctgcttgttgctacggat
gtagcagcccgtggtctggatgtggacgatttgactcacgtcatcaactacggcttgcct
gatgatacagaaagctacactcaccgcagcggacgtacgggacgtgccggaaaaaccggt
acttctatcgctatcatcaatctccgcgagaagggaaagttaagagaaatagaacgaatt
atcggcaagaaattcattaccggagagatgccgactgcggcaggcatttgccagaagcag
ttgattaaggttattgacgaccttgaaaaagtaaaagtaaatgaagaagaaatcgcaggc
ttcatgccggaaatctatcgtaaactagaatggttgagcaaggaagacctgataaaacga
gtggtttcgcacgaattcaaccgtttcgcagaatattaccgccaccgcccggaaatagaa
caaccaacaattgaaagccgtagtgaacgtgccagaaaaggtgaccgcaaagaaaacggt
ttcgaaaagagaagtcggaaagctgctccaggcttcaaccgcctattcatcaatctgggt
aaaacagacagtttcttccccagtgatcttatcggcttattgaacagtaatacacgcgga
cgtatcgagttgggacgcattgacctgatgcagaacttctctttcttcgaagtacctgaa
aaagaaactgtcaatgttctaaaagctctaaaccgtgccaaatggaatggtcgcaaagtt
gttgtagaagtttccagtgaagaaggcggaaaaggacacgaaaacggttcgggtgaacgc
aaaggcggtaaaagatccggtaaaaacgaagagcgcgctccacgctatgaaaataaagac
agaaaatctaaggatgcttctgccaaaggttcaaaatccagcaagaaggaaaaaccaagc
cgtgcagagcggggatattcggatgcccgcggaccgaaaaggaaagataactggcaggaa
tttttcaaagataaggagcctgacttcagtgaagaaggatgggcgagaagaaagcccaaa
aagcaactttaa
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