Borreliella californiensis: QIA17_01675
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Entry
QIA17_01675 CDS
T09333
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
bcaf
Borreliella californiensis
Pathway
bcaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QIA17_01675 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bcaf03021
]
QIA17_01675 (rho)
03019 Messenger RNA biogenesis [BR:
bcaf03019
]
QIA17_01675 (rho)
Transcription machinery [BR:
bcaf03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
QIA17_01675 (rho)
Messenger RNA biogenesis [BR:
bcaf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
QIA17_01675 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
NACHT
AAA
Spore_III_AA
DUF5091
AAA_22
DUF1269
NB-ARC
AAA_25
OB_RNB
AAA_18
Motif
Other DBs
NCBI-ProteinID:
WKC91532
LinkDB
All DBs
Position
complement(235626..237173)
Genome browser
AA seq
515 aa
AA seq
DB search
MDKKNGGFDLESEIRRLDVSKEFKIEDNLKKKVVKVVAKKDSASNLAKSADLSSAKDSNS
VVFPEFDYDIPSSGLENNIKTLEQSNIIKFFNGKDYVEIEKLYDKPITEVRKIVEGLGTN
HTIAVTMKKTELIFLLVKILSENDINVLFTGVLDVLSDGYGFLRTASNSYLSGGNDVYVS
PSQIRLFNLRTGDILYGQIRSPRDGERFFAMVKIKSINDQDPTFAQNRIPFDNLTPLYPN
MKLNLEYENCNISTRLINLFSPIGKGQRALIVSPPKAGKTTLLQKIANAITTNYSDVILM
ILLIDERPEEVTDMIRSVKGEVIASNFDEQASRHVQVAEMVIEKAKRLVENKKDVVILLD
SITRLARAYNQTMPTSGKILSGGVDSNALHKPKRFFGSARNIEEGGSLTIIATALVDTGS
KMDEVIFEEFKSTGNMELILDRSLADRRLFPAINIKKSGTRKEELLLSEEERSKILLIRR
ILGGVDDYEGVEVLIEKMKKSKNNEIFLKTMSNGN
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atggataaaaaaaatggtggatttgatttagaaagtgaaataaggcggttggatgtttct
aaagagtttaagattgaagataatttgaaaaaaaaagtggttaaagttgttgctaaaaag
gattctgcatctaatttggcaaaatctgcagatttaagtagcgcaaaggattcaaacagt
gtagtatttcctgaatttgattatgatattccttcttcaggtttagaaaataatattaaa
actttagagcaaagtaatatcatcaagttttttaatggtaaagattatgtagagattgaa
aaactttatgataagccaattacagaggttagaaaaattgttgaaggccttgggactaat
catactattgctgtaacaatgaaaaaaacagaattaatctttttattagtaaaaatatta
agtgagaatgatattaatgttttatttacaggtgtgcttgatgtgcttagtgatggttat
gggtttttgagaactgcatcaaattcttatctttcaggaggcaatgatgtttacgtttct
ccttctcagattagactttttaatttaaggactggtgatattttatatggccaaattaga
tcgcctagagatggtgagagattttttgcaatggttaaaattaaatctattaatgatcaa
gatcctacgtttgctcaaaatagaataccttttgataatttaacccctctttatcccaat
atgaaattgaatcttgaatatgaaaattgtaacatttctacaaggcttattaatcttttt
tcacctataggtaaggggcaaagggctttaatagtttctcctccaaaagcgggaaagact
accttgcttcaaaaaatagctaatgcaataactacgaattattcagatgttattttaatg
atattgcttattgatgagagaccagaagaagttacagatatgattcgtagtgttaaaggc
gaagtaattgcatctaattttgatgaacaggctagtaggcatgttcaagtagcagagatg
gttattgaaaaggcaaaaaggcttgttgaaaacaaaaaagatgttgttattttgcttgat
tctattacaaggcttgcaagggcatataatcaaactatgccaacttctggtaaaatttta
tcgggtggggtagattctaatgctcttcataagccaaagaggttttttggatctgctaga
aatatagaggaagggggaagtttgactattatagctactgctttggttgatactggtagt
aaaatggatgaagttatttttgaagaatttaaaagtaccggcaatatggaattaattctt
gatagaagtttggcagacagaagacttttccctgctattaatattaaaaagtcaggcacc
agaaaagaagaattgcttcttagtgaagaggaacgttctaagattttgcttattagaaga
atactcggaggtgttgatgattatgagggagttgaagttctgatagaaaagatgaaaaaa
agtaaaaacaatgagatctttttaaagacaatgagcaatggtaattaa
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