Paraburkholderia caribensis: K788_0002385
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Entry
K788_0002385 CDS
T04141
Name
(GenBank) DNA helicase/exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
bcai
Paraburkholderia caribensis
Pathway
bcai03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bcai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
K788_0002385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bcai03400
]
K788_0002385
Enzymes [BR:
bcai01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
K788_0002385
DNA repair and recombination proteins [BR:
bcai03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
K788_0002385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AraC_binding
Herpes_TK
DUF374
AAA_11
Motif
Other DBs
NCBI-ProteinID:
ALL64881
UniProt:
A0A0P0R9Q5
LinkDB
All DBs
Position
1:2212614..2216333
Genome browser
AA seq
1239 aa
AA seq
DB search
MSGTAWMHAPAAHELDVFACDLDGVNQIEASAGTGKTWNICALYVRLLLEKNLSADQILV
VTFTKAATAELHERIRGRLAEVQRAIETGDDGGDPFIVRLFETTLSEERGIDLEAAAKTV
RRALRTFDQAAIHTIHAFCQRALQEAPFAAAMPFAFDMEADDAALRFELAADFWREQVEP
VAAGHRSFAAWLVEKGAGPASLDEQLARRLKKPLAQLRWGDVGAAEGAPNDMQARFDEAC
EMWHAERDNIVRLLEQVQERLSKTSHKAETVSAAISAWSDYFAQDDCHAAPPKVALKLTA
TALTKGTKKNFEPPAHAFFIAADELAAASLAAEAAQRARWLGLVQKWLDYAPHELTARKR
TRRVVSFDDLLSNLYRALASHVWLADALRARYPAALIDEFQDTDPLQFAIFNRIFAPKGP
LFLVGDPKQAIYSFRAADLHTYLAARAQASARYTLAVNQRSTAPIVEACNRIFEANARAF
VLEGLDYQPVRAGERQRPPLVDRDGAAGDDFRVWTLPQGDAVLTKRDAQRAASEACAAEI
VRLLRGAREGSVTIGDKPLAPGNIAVLVQTHKQGSLIKRVLSAWGVGSVELAQASVFESL
DAEQIERVLAAVDTPGDLRRLRAALATDWFGLDAATLWRLEQVDEAPPTSGDAARAVDAM
SWVERFSRYRMLWHERGFAVMWRTLMRELRVAQRLVEGAEGERRLTNVNHLAELVQARAA
TQPGIAPTLRWLAAQRAESGRGGEEAQLRLESDRNLVQIVTVHKSKGLEYAVVFCPFLND
GRLREPYATVLPDALEYHDDDGSAVLHYGSDDEQADHANRQAMREQAAERARLIYVALTR
AVYRCYLVAGAYLASRSTKESARSVLNWLVAGKARDFDEWLAKPLDDDSVYQHWEALAGD
PVAIADLPSVTRRVPLESVADSNARMRARMNQRALRDTWRMASFSSLIAAGSRTDDASAV
SEEARPDHDELADIATGEPHAPVFDVVTAPVELSPDDILAFPRGPAAGECLHRMFELADF
SDRSTWPHAIERALHERPAPAEPELAQRLPAMMHRLLADIVSTELVPGMTLAALDPQRRL
NEMEFLFSAASLDFPALRALLAAHGFPDVALEPGALRGFVKGFIDMIVEHEGRFWVVDWK
SNHLGDTPEDYAAAPLDEAMASHAYHLQALLYVVALHRYLRLRLANYDYDRHIGGYLYLF
VRGVRPGWQHGEHAAGVHARRPDHALVVALDALMDGGAQ
NT seq
3720 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcacggcatggatgcatgcgcccgcggcgcacgagctcgatgtgttcgcgtgc
gatctcgatggcgtcaatcagatcgaggcatcggcgggaacgggtaagacatggaacatc
tgcgcgctctatgtgcggctgttgctggagaagaatctgagcgccgatcagattctcgtt
gtgacgtttacgaaagcggcgacggccgagctgcatgaacgcatacgcgggcgtctcgcc
gaagtacagcgcgcgatcgaaacgggcgacgatggcggcgatccgttcatcgtcaggctg
ttcgaaacgacgctttccgaagaacgcggcatcgacctcgaagccgctgcgaagacggtg
cgccgcgcgttgcgcacgttcgatcaggcggccatccacacgattcacgcgttctgccag
cgcgcgttgcaggaagcgccgtttgccgctgcgatgccgttcgcgttcgacatggaagcg
gacgacgctgctttgcgcttcgaactggccgccgacttctggcgcgagcaggtcgaaccc
gttgcggcggggcatcgatcgtttgcggcgtggctggtcgagaagggcgcagggcccgcc
tcgctcgacgaacagctggcgcggcggctgaagaagccgcttgcgcaattgcgctggggc
gacgtcggtgcagccgaaggtgcgccgaacgatatgcaggcgcgcttcgacgaagcctgc
gagatgtggcacgccgagcgcgacaacatcgtgcgtctgctcgaacaggtgcaggagcgt
ctgagcaagacctcgcacaaggccgaaacggtgagcgccgcgatcagcgcgtggagcgac
tatttcgcacaggacgactgtcacgcggcgccgccgaaagtcgcgctgaaactaacggcc
accgcgttgacgaaaggcacgaagaagaatttcgagccgcccgcgcatgcgttcttcatc
gcagccgacgaactggccgcggcctcgctcgcggcggaagccgcgcagcgcgcgcgctgg
ctcgggctggtgcagaagtggcttgactatgcgccgcacgaactgacggcaagaaagcgc
acgcgccgcgtcgtgtcgttcgacgacctgctgtcgaacctgtaccgcgcgctggccagt
cacgtgtggctcgcggacgcgttgcgcgcgcgctatcccgcggcgctgatcgacgagttt
caggacaccgacccgctgcagttcgcgatcttcaatcgcattttcgcgccgaaggggccg
ctctttctggtcggcgatccgaagcaggccatctacagttttcgcgcggccgatctgcac
acgtatctcgcggcgcgggcgcaggcgtcggcgcgttacacgctcgccgtcaatcagcgt
tcgacggcacccatcgtcgaagcatgcaaccggattttcgaagcgaacgcgcgggcgttc
gtgctcgaagggctcgactatcaacctgtgcgggcgggcgagcggcagcggccgccgctc
gtcgaccgcgacggcgcggcgggcgatgatttccgcgtgtggacgctgccgcaaggcgac
gcggtgctgaccaagcgcgacgcgcagcgcgcggcgagcgaggcgtgcgctgcggagatc
gtgcgtctgttgcgcggggcgcgcgaaggcagcgtgacgatcggcgacaagccgctcgcg
cccggcaacatcgccgtgctcgtgcagacgcacaagcagggcagcctgatcaaacgcgtg
ttgtccgcgtggggcgtgggcagcgtcgagctggcgcaggcgtcggtgttcgaatcgctc
gacgccgagcagatcgaacgcgtgctggccgccgtcgatacaccgggcgacttgcgccgc
ctgcgggccgcgctcgcgaccgactggttcggtctcgatgctgccacgctgtggcggctc
gaacaggtcgacgaggctccgccgacatcgggcgacgccgcgcgcgctgtcgatgcgatg
agctgggtcgagcgtttctcgcgctaccggatgctgtggcacgagcgcggcttcgccgtc
atgtggcgcacgctgatgcgcgaactgcgcgtcgcgcagcggctagtcgagggcgcggaa
ggcgagcggaggctgaccaacgtcaaccatctggccgaactcgtgcaggcgcgcgccgcg
acccagccgggcatcgcaccgaccttgcgctggctcgccgcgcaacgcgcggaaagcggg
cggggcggcgaagaagcgcaactgcggctcgaatcggaccgcaacctcgtgcagatcgtc
accgtgcacaagtccaagggcctcgaatacgcggtcgtgttctgtccgtttctcaatgac
ggccgcctgcgcgagccgtacgcgacggtcctgcccgatgcgctcgaatatcacgatgac
gacggttcggccgtgcttcactacggcagcgacgacgagcaggccgatcatgcaaaccgc
caggccatgcgcgaacaggcggccgagcgcgcgcggctgatctatgtcgcgctgacgcgg
gccgtgtaccgctgttatctggtcgcgggcgcgtatctggcgtcgagatcgacgaaggaa
tcggcgcgcagcgtgttgaactggctcgtggcgggcaaagcccgcgatttcgacgaatgg
ctcgccaagccgctcgatgacgactcggtttatcagcattgggaggcgctggcgggcgac
cccgtggccatcgcggatctgccgtccgttacgcgtcgggtgccgctggaaagcgtggcc
gacagcaacgcccggatgcgcgcgcgcatgaaccagcgcgcattgcgcgacacgtggcgg
atggcgagcttcagctcgctgatcgcggcgggttcgcgcaccgacgatgcgtcagcagtc
agcgaagaagcgcgtccggaccacgacgaactggcggacatcgcgacgggcgaaccgcac
gcgcccgttttcgatgtcgtcacggcgcccgtcgaactctcgcccgacgacatcctcgcg
tttccgcgcggcccggcggcgggcgagtgtctgcaccgcatgttcgaactcgcggatttc
tccgaccgcagtacgtggccgcacgcaatcgaacgcgcgctgcatgagcggccagcgcct
gccgagcccgagctcgcgcaacgtctgcccgcgatgatgcaccgcttgctcgccgatatc
gtgagcacggaactcgtgcccggcatgacgctcgccgcgctcgatccgcagcgccggctc
aatgaaatggagtttctgttctcggcggcgtcgctggactttcccgcgttgcgcgcgttg
ctcgccgcgcacggcttccccgatgtcgcgctggagccgggcgcgctgcgtggcttcgtc
aaaggtttcatcgacatgatcgtcgagcacgaggggcgtttctgggtggtcgactggaag
tcgaaccatctcggcgacacgcccgaggactacgccgccgcgccgctcgacgaagcgatg
gcgagccacgcgtatcacctgcaggcgctgctgtatgtcgtcgcgctgcatcgctatctg
cggctgaggctcgcgaactatgactatgacaggcacatcggcggctatctgtatctgttc
gtgcgcggcgtacggcccggctggcaacacggtgaacacgcggccggcgtgcatgcgcgg
cggccggaccacgcgctcgtcgtggcgctcgatgcattgatggacggaggcgcgcaatga
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