Paraburkholderia caribensis: K788_0004010
Help
Entry
K788_0004010 CDS
T04141
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN/SigL
KO
K03092
RNA polymerase sigma-54 factor
Organism
bcai
Paraburkholderia caribensis
Pathway
bcai02020
Two-component system
bcai02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bcai00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
K788_0004010
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
K788_0004010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bcai03021
]
K788_0004010
Transcription machinery [BR:
bcai03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
K788_0004010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
HTH_38
HTH_Crp_2
HTH_23
Motif
Other DBs
NCBI-ProteinID:
ALL63142
UniProt:
A0A0P0R524
LinkDB
All DBs
Position
1:425491..427011
Genome browser
AA seq
506 aa
AA seq
DB search
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVSMAIAQNPLLETEDDWIASPLRV
AADGTVIAQTSQNTSPEEMSSAPPSSSSSSSSGESQEGGEPQGVDEYNGMGSDANSDANQ
WNLDDYGRSGNASDDDDLPPLQIHESTTTLRDHLTAQLRVTGASARDRALITFLIESLDD
DGYLTATFDEILADLPEELEVDTDELNAALALLHSFDPAGVGARSASECLRLQLCRLEPS
PTRTLALDIVAHHLELLAARDFTRLRKYLKASDDDLREAHALIRSLEPFPGAAYGKAEAD
YVVPDIMVRKTAQGWQAELNPEVVPKLRINHLYANILRNNRGDPGSGSLRQQLQEARWLI
KNIQQRFETILRVAQAIVERQKNFFAHGEIAMRPLVLREIADTLGLHESTVSRVTTGKYM
LTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDTKSPLSDSRIAELLAEQG
FVVARRTVAKYREALKIPAVNLRKSL
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgaaagccagcctccaacttcgcctgtcgcagcatcttgcgctgacaccacaactgcaa
cagtccatccggctgctgcagctgtctacgcttgaactgcaacaggaagtgtcgatggcg
attgcccagaatccgttgctcgaaacagaggacgactggatcgcgagtccgttgcgcgtc
gccgccgacggcactgtcatcgcgcagacctcgcagaacacgtcgccggaagagatgtcg
agcgcgccgccgtcctcgtcgtcgtcgtcctcctccggcgaaagccaggaaggcggcgag
ccacagggcgtggacgaatacaacggcatgggttcggatgcgaactcggacgccaaccag
tggaatctcgacgactacggccgttcgggcaacgcatcggacgacgacgatctgccgccg
ctgcaaatccacgaatcgaccacgacgctgcgcgatcacctgactgctcaacttcgcgtc
acgggagcaagcgcacgcgaccgcgcgctcatcacgttcctgatcgaatcactcgacgac
gacggctatctgacggccaccttcgacgaaatcctcgccgatttgcccgaagaactggaa
gtcgataccgacgaactcaacgccgccctcgccttgctgcacagcttcgacccagcgggg
gtcggcgcgcgttcggcgtccgaatgcctgcgtttgcagttgtgccggctcgagccgtcg
cccacgcgcacgctcgcgctcgacatcgtcgcgcatcacctggaactgctcgccgcacgc
gacttcacgcgactgcgcaaatacctgaaggcaagcgacgacgatctgcgcgaagcgcat
gcgctgatccgctcgctggagccgttccccggtgcggcctacggcaaggccgaagcggac
tacgtcgtgcccgacatcatggtgcgcaaaacggcacagggatggcaggccgaactgaat
ccggaagtcgtgccgaaactgcgtatcaaccatctgtacgcgaatatcctgcgcaacaat
cgcggcgatcccggcagcggttcgctgcggcagcaactgcaggaggcgcgctggctgatc
aagaatatccagcagcgcttcgagacgatcctgcgtgtcgcacaggcaattgtggagcgt
caaaagaactttttcgcccacggcgaaattgccatgcgccccttggttttgcgggaaata
gctgatacgctgggtttacacgagtcgacggtctcacgtgtgacaaccggcaagtacatg
ctcaccccattcgggacgcttgaatttaagtacttcttcggatcgcacgtgtccaccgac
acggggggcgcggcctcttcaacggccattcgcgcactcatcaagcaactgataggagcg
gaagacaccaaatctcctctttcagacagccgcattgccgaactgctggcggaacagggt
ttcgtcgtcgctcgccgtaccgttgcgaaataccgcgaagcactgaaaatcccggcagtc
aatctgcgcaagtctctttag
DBGET
integrated database retrieval system
