Paraburkholderia caribensis: K788_0004698
Help
Entry
K788_0004698 CDS
T04141
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bcai
Paraburkholderia caribensis
Pathway
bcai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K788_0004698
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcai03019
]
K788_0004698
03400 DNA repair and recombination proteins [BR:
bcai03400
]
K788_0004698
Enzymes [BR:
bcai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K788_0004698
Messenger RNA biogenesis [BR:
bcai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K788_0004698
DNA repair and recombination proteins [BR:
bcai03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
K788_0004698
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
ALL69088
UniProt:
A0A0P0RJZ0
LinkDB
All DBs
Position
2:complement(3057378..3059135)
Genome browser
AA seq
585 aa
AA seq
DB search
MPASTETSSKAIHRTLRDVFGFDSLRPGQREIIDSVMQGHDTLAIMPTGAGKSLCYQLPA
MHLSGLTLVVSPLIALIKDQRDKLLAADVEAMQINSTLSAAEERQTYENLNTAARAIVFV
TPEQLAKPTLLEALHGRPGPCAQSRVSLIVVDEAHCISQWGHDFRPAFLEIADAVRSLGG
PPVLALTATATTAVVDDIVRTLGMRKARVLHTGVYRPNLRYSVTQVSVAGTKGRASARST
QAKLAALRALLESRSDAGIIYTATVREAERLAAAVHEWGVPAALYHGRIGSRERHDAQDR
FMRGDVRVMIATNAFGMGIDKADIRFVVHDQMPGSIDAYYQESGRAGRDGEAADCILLFD
LNDRRVQQFLQLGRYPDRELVERVREALGKHDDGTATGINADDLARMLPDIGRNKLLVAL
KILLDAGLVRRNRARRYLCRDGAPGSDVLATALQRYDELAKRDGETLQQMIDYAQTGGCR
WHTILEHFGYADEVDRCGTCDNCRNPPHVEPFQAPMEAIAPVRDGTMNAASGTRERLHCF
TRGQCVRVRKYGTGQVTFATPDQVAVLFPDGTTRTFLTRFVKAAA
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atgccagcttcgacagaaacgagcagcaaggccatacaccgcacgctacgcgacgtgttt
ggtttcgattcgctgcgtccgggacaacgggagattatcgacagcgtaatgcagggacac
gacacgctcgccatcatgccgacgggtgctggcaaatcgctgtgctaccaactgcccgcc
atgcatctgagcggcctgaccctcgtcgtatcgccattgatcgcattgataaaggatcaa
cgcgacaaactgctcgccgctgacgtggaggcgatgcagatcaacagcacactgagcgcc
gccgaggaaaggcagacgtatgaaaacctgaacaccgccgcgcgcgcgattgtgttcgtg
acaccggagcaactcgccaaaccgacgctgctggaagcgcttcacgggcgtcccggccca
tgcgcgcaatcacgtgtgagtctgatcgttgtcgacgaagctcactgcatctcgcagtgg
ggacacgacttcaggccggccttcctggagatcgccgacgcggtgcgcagccttggaggt
ccgcccgtcctcgcgctcacggcgacggcgacgacggctgtcgtcgacgatattgtccgc
acgctcggcatgcgcaaggcgcgcgtgctgcacacaggcgtctatcggccgaatctgcgg
tacagcgtcacgcaggtgtcggtcgcgggcaccaagggacgtgcatccgcgcgttccacg
caggcgaagctcgcagcgcttcgcgcgttgctcgagtcgcgcagcgacgccgggatcatc
tacacggcgacggtgcgcgaagcggaacggctggcggcagcggtccacgaatggggcgtg
ccggctgccctttatcacggccgaatcggttcccgcgagcggcatgacgcacaggaccgc
ttcatgcgcggcgacgtgcgtgtgatgatcgcgaccaacgcgttcggtatgggcatcgac
aaggccgacatacgtttcgtcgtgcatgaccagatgccgggcagtatcgatgcgtactat
caggagagcgggcgcgccggccgcgacggggaagctgccgattgcatcctgctgttcgat
ctgaacgaccggcgtgtgcagcagttcctgcaacttggccgctatccggatcgcgaactc
gtcgagcgcgtgcgcgaggcgctgggcaagcacgacgacggcaccgcgacgggcatcaac
gcggacgaccttgcgcgcatgctcccggacatcgggcgcaacaaacttctggtggcgctg
aagattctgctcgacgcagggcttgtacgtcgtaatcgcgcgcgccgctacctgtgccgc
gacggcgcgccgggcagcgatgtgcttgccacagcgctgcaacggtacgacgaactggcg
aagcgcgatggtgagacacttcaacagatgatcgactatgcgcaaacgggcggttgccgc
tggcacaccatactcgagcatttcggctatgccgacgaggtcgaccggtgcggcacatgc
gacaactgccggaacccgccacacgtcgaaccatttcaggcgcccatggaggcaatagcg
ccggttcgagacgggacgatgaatgccgcgtccggcacacgcgaacggctacactgtttt
acgcgcggccagtgcgtgcgggtgcgcaagtacgggacaggccaggtgacgttcgcgacg
ccagaccaggtggctgtgctctttcctgatggaaccacgcgcaccttcctcacccgattc
gtcaaggccgctgcatga
DBGET
integrated database retrieval system
