Paraburkholderia caribensis: K788_0005027
Help
Entry
K788_0005027 CDS
T04141
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bcai
Paraburkholderia caribensis
Pathway
bcai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K788_0005027
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcai03019
]
K788_0005027
Enzymes [BR:
bcai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K788_0005027
Messenger RNA biogenesis [BR:
bcai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K788_0005027
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
B12-binding
Motif
Other DBs
NCBI-ProteinID:
ALL69490
UniProt:
A0A0P0RL51
LinkDB
All DBs
Position
unnamed:116422..117867
Genome browser
AA seq
481 aa
AA seq
DB search
MSFASLGLIDPLLRNVQDLNYRTPTPVQVKAIPAVLSGKDVMAAAQTGTGKTAGFALPVL
QRLVQYGPAVSSNRARVLVLVPTRELAEQVLQSFIEYGKGLDLRCLAAYGGVSINPQMMK
LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALPAQR
QTLLFSATFTDDIRAMAANILRGPVNISVSPPNATASKIRQWVVTVDKKNKPDLFMHLVV
ENNWKHALVFVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVHMLVA
TDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIE
ALIRQTLRREEEPGFEAEHRVPQTSATGEIIKKPKKPKKPKVPQAASGAMQMPSKKPRPQ
SGEDKRKPAAQRAVAVGKGTSLSSGSPFSTQKPRSKPAGKPAAGSRNPAGKPAGGRGKRQ
P
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgcctcgcttggcctgatcgatcccttgctgcgtaatgtgcaggacctcaat
taccggacacctacaccggtgcaggtcaaggcgattcctgccgtgctcagtggcaaggac
gtcatggcagcggcacagacgggcactggcaagacggcgggctttgcgctcccggtcctg
caacggctggtgcaatatggcccagcggtgtccagcaaccgcgcgcgtgttctggtgctg
gtgcccacgcgtgaactggctgaacaggtgctgcaaagctttatcgaatacggcaagggc
ctcgacttacgatgcctggccgcctacggcggtgtgagtatcaacccgcagatgatgaag
ttgcgcaaaggcgtggatgtgctcgttgccacgccgggccgcttgctcgatctcaaccgg
cagaacgcagtgcagttcgatcaggtgcaaacgctggtgctggatgaagccgaccgcatg
ctggatctgggctttgcgcgcgaactcaacgccgtctttgctgcgttgcccgctcaacgc
cagaccctgctgttctccgcgacgtttaccgacgatatccgcgccatggcggcgaacatt
ctgcgcggcccggtgaatatcagcgtcagcccgcccaatgccacggccagcaagatcagg
cagtgggtggtgacggtggataaaaagaacaagcctgatctcttcatgcaccttgtggtt
gagaacaactggaagcacgcgctggttttcgtcaagacccgcaatggcgtggattacctg
gcggccatgctggacgaagcgggctatgcggtcgacacgatccacggcgacaagccgcaa
cccgcgcgcctgcgtgcgctggagcgcttcaagacgggcgaagtccatatgctggtcgcc
accgatgtggctgcgcgcgggctggatatcgacgatcttccgctggtgatcaacgtcgat
ctgccgatcgtggcgcaagattatgtgcaccgtatcggccggacgggtcgagcgggcgcc
agcggcgtggcggtgtcgctggtgtgcgccgacgaagcgccgcaactggccgcgattgaa
gcgctgatccggcaaacgctgcggcgtgaagaagagccgggtttcgaagccgagcaccgc
gtgccgcaaaccagtgcgacgggcgagatcatcaagaaacccaaaaagcccaagaagccc
aaagtgccgcaagctgcgtcgggcgcgatgcagatgcccagcaaaaaaccgcgtccgcag
agtggcgaagacaaacgcaagcccgcggcgcagcgcgccgtggctgtgggtaagggcacg
agcttgtccagtggcagcccgttcagcacgcaaaagccgcgcagcaaacccgccggcaag
ccagctgcgggttcacgtaacccggctggcaaacccgctggcggtcgcggcaaacgtcaa
ccctga
DBGET
integrated database retrieval system
