Paraburkholderia caribensis: K788_0005803
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Entry
K788_0005803 CDS
T04141
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN/SigL
KO
K03092
RNA polymerase sigma-54 factor
Organism
bcai
Paraburkholderia caribensis
Pathway
bcai02020
Two-component system
bcai02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bcai00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
K788_0005803
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
K788_0005803
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bcai03021
]
K788_0005803
Transcription machinery [BR:
bcai03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
K788_0005803
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
DUF2218
Motif
Other DBs
NCBI-ProteinID:
ALL66655
UniProt:
A0A0P0RDW4
LinkDB
All DBs
Position
2:complement(511528..513021)
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AA seq
497 aa
AA seq
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MPPTIELRAKQAFALTPRLQQSVRLLQLSSLEFQQELRNALDTNPFLEYDPSVSEDLSAG
KTADSNGADGETLPVTERDSALESASAEPATESVASSSSDDGGDYSSGDYSGDTYGRGAS
RYNGDSDAADPTEWARVQPTLHEQLHDALRLYRLDDRDREVARLIIEALDDDGYLRQDLA
DLTDVFDIEPALTEDELLVALRLVQTLDRPGLAARSLSECLALQINALPADTPGRDVAKQ
VVEHHLDRLARREHAELQKQIGCDAEELRVACALVRKLDPKPGNSYGRADDNYIVPDVIV
RSVRNKWVVTVNPAVLPRARIHRMYAELFAQSAGTSRSPLAQQLQEARWLIRNAQQRFET
IQRVAECIVAHQKPFFQYGEIALKPLVLRDVAEELGLHESTISRATGNKYMATPRGIFEF
KHFFPRELGTESGGTCSAAAVRALLKEMIAAENIRDPLSDVALAKMLADQGVLVARRTVA
KYRHLMKVPPAELRRQV
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgccgcctacaatcgaactacgcgcgaagcaagctttcgcgctcacaccgcgcctgcag
cagtccgtgcgtctgcttcaactgtcgtcgctggaatttcagcaggaactgcgcaacgcg
ctcgacaccaatcctttcctcgaatacgacccgtctgtttcggaagatctgtcggcaggc
aagacggccgatagcaacggagccgacggcgaaaccctgcccgtcacggaacgcgacagc
gcactcgaaagcgcgtcggcggagccggccacggaaagcgttgcatcatcgtcgtcggat
gacggcggcgactattctagcggcgattattcgggcgatacctacggccgtggcgcgtcg
cgctacaacggcgactccgatgccgccgacccgaccgaatgggcgcgcgtgcaaccgacg
ctgcacgagcagttgcacgatgcgttgcgtctctaccggctcgacgaccgcgaccgcgaa
gtggcgcgcctcatcatcgaagcactcgacgacgacggctatctgcgccaggacctcgcc
gatctcacggacgttttcgacatcgaacccgcgttgacggaggacgagttgctggtcgcg
ctgcggctcgtgcagacgctggaccgcccaggactcgcggcgcgttcgctgtcggagtgt
ctggcgctgcagatcaatgcgctgcccgccgatacgccgggccgcgacgtggcgaagcag
gtggtcgagcatcatctcgaccgtcttgcgcgtcgcgagcacgccgagttgcagaagcag
atcggctgcgatgccgaggaattgcgcgtggcgtgtgcgctcgtgcgcaagctggacccg
aagccgggcaattcgtatggccgcgccgatgacaattacatcgtgccggatgtgatcgtg
cgcagcgtgcgcaacaagtgggtggtgaccgtcaatcccgccgtgctgccgcgcgcgcgc
atacaccgcatgtacgcggaactgttcgcgcagtcggcgggcacgagccgctcgccgctc
gcgcagcagttgcaggaagcgcgctggctgattcgcaacgcgcaacagcgcttcgaaacg
attcagcgggtagccgagtgcatcgtcgcgcatcagaagccattcttccagtacggcgag
atcgcgttgaagccgcttgtattgcgcgacgtggccgaagaactcggcctgcacgaatcg
acgatttcgcgcgcgacgggcaacaagtacatggcgacgccgcgcggcatcttcgagttc
aagcatttcttcccgcgcgaactgggtacggaaagcggcggcacctgttcggcagcggcc
gtgcgtgcgctgctcaaggaaatgatcgccgcggaaaacatccgcgatccgctgtccgat
gttgcgctcgcgaagatgctcgctgaccagggcgtgctcgtcgcgcgacgcacggtggcg
aagtatcgccatctgatgaaggtgccgcctgcggagttgcgccgacaggtttga
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