Paraburkholderia caribensis: K788_0005810
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Entry
K788_0005810 CDS
T04141
Name
(GenBank) DNA topoisomerase IB, poxvirus type
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
bcai
Paraburkholderia caribensis
Brite
KEGG Orthology (KO) [BR:
bcai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bcai03032
]
K788_0005810
03400 DNA repair and recombination proteins [BR:
bcai03400
]
K788_0005810
Enzymes [BR:
bcai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
K788_0005810
DNA replication proteins [BR:
bcai03032
]
Prokaryotic type
DNA Topoisomerases
K788_0005810
DNA repair and recombination proteins [BR:
bcai03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
K788_0005810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
ALL66662
UniProt:
A0A0P0RDP2
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All DBs
Position
2:516678..517874
Genome browser
AA seq
398 aa
AA seq
DB search
MKTMTRNAIDAIAQGLSTAMPAGLRHADDTRPGYTRRKLRSVFVYFDLDGRRIDDESQIA
RINALAIPPAYTDVWICPDPRGHIQATGRDARGRKQYRYHPQWRETRDADKFGRMAAFGH
ALPKIRARVARDLAREGMPREKVIAAVVHLLDTTLIRIGSVEYARDNQSYGLTTLRKKHV
KIRAGEVRFRFAGKSGIEHDVSVDNARVKRIVRKCAELPGHDLFQYIDEDGARHTIGSAD
INAYLRDISSADFSAKDYRTWAGSVYAMAALRQLVCESAADTRRHVVATVKEVATLLRNT
PAVCKRCYIHPEVIAAFEAGELQSLLPQRAKRHMKVDEAAFAALLAQVEKRARLAHGAAR
NGGKASLNVESARLATLLTRSSALRKRANARKRADPTA
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacgatgacacgcaacgcgatcgatgcgatcgcccagggactgtccaccgcgatg
cctgcgggactgcggcacgcggacgacacacggcccggctacacgcgcagaaagctcaga
agcgtgttcgtctatttcgatctggacggccgacgcatcgacgacgaatcgcagattgcg
cgcatcaacgcgctcgcgataccgcccgcctacaccgatgtctggatctgccccgacccg
cgcggccacatccaggcgacgggccgcgatgcgcggggccgcaagcagtaccgttaccac
ccgcaatggcgcgaaacgcgcgacgccgacaagttcggccgcatggccgcgttcgggcac
gcgctgccgaagatccgcgcgcgagtcgcacgcgatctcgcgcgtgaaggcatgccgcgc
gagaaggtgatcgcggccgtcgtgcatctgctcgatacgacgctgatccggatcgggagc
gtcgaatatgcacgcgacaaccagtcctatgggctcaccacgctgcgcaagaagcacgtc
aagattcgcgcgggcgaagtgcgtttccgttttgcgggaaaaagcggcatcgagcacgac
gtgagcgtcgacaatgcgcgcgtcaagcgcatcgtgcgcaagtgcgcggagttgccgggc
cacgacctcttccagtacatcgacgaagacggcgcgcgccatacgatcggctcggccgac
atcaacgcgtatctgcgcgatatcagcagcgcggacttttcggcgaaagactatcgcacg
tgggcaggcagcgtgtatgcgatggcggcgctgcgccagctggtgtgcgaaagcgccgcc
gacacgcgccgtcacgtcgtcgcgaccgtgaaagaagtggccacgctgttgcgcaacaca
cctgctgtctgcaagcgctgctatatccacccggaggtgatcgccgcgtttgaagcgggc
gaattgcaaagcctgctgccgcagcgtgccaagcgtcacatgaaggtcgacgaagcggca
ttcgccgccttgctcgcacaggtcgaaaagcgcgcgcggctggcacacggcgccgcgcgc
aacggcggcaaggcgtcattgaacgtcgaaagcgcgcggctcgctacgctgctcacccgg
tcgagcgcactgcgcaagcgggcaaacgcacgcaagcgcgccgaccctaccgcctga
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