Paraburkholderia caribensis: K788_0006635
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Entry
K788_0006635 CDS
T04141
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bcai
Paraburkholderia caribensis
Pathway
bcai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K788_0006635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcai03019
]
K788_0006635
Enzymes [BR:
bcai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K788_0006635
Messenger RNA biogenesis [BR:
bcai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K788_0006635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Fe-ADH
ERCC3_RAD25_C
AAA_22
HEM4
MerR-DNA-bind
RPC3_helical
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
ALL64568
UniProt:
A0A0P0R8N2
LinkDB
All DBs
Position
1:1890977..1892485
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AA seq
502 aa
AA seq
DB search
MATRKRQSAGAFLAKATMSDTATTPTNATFDQFGLHADILKAIAEQGYTTPTPIQAEAIP
VVLGGRDVMGAAQTGTGKTAGFSLPIIQRLLPLASTSASPARHPVRALILTPTRELADQV
AANVQAYAKHTSLRSAVVFGGVDMNPQSAELRRGVEILIATPGRLLDHVQQKTANLGQVQ
MLVLDEADRMLDMGFLPDLQRILNLLPAERQTLLFSATFSPEIKKLAATYLRNPQTIEVA
RSNSTATNVTQIVYEVAEGDKTGAVVKLIRERGLKQVIVFCNSKIGASRLARQLERDGVV
ATAIHGDRTQSERMQALDAFKRGEIEALVATDVAARGLDIAELPAVINFDLPFNAEDYVH
RIGRTGRAGASGDALSLFSPNERKQLADIEKLIKRPLDVQRLTVDTPVRHHHDERGARRE
RDDRGSRRRTTGAHERPAHGTHHRQQPVDDFFLKPYEPSPSAVSAAAKRDEAPAAPQKPT
SKQPLAALLGGFGMPRKTTPSN
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
ttggcaacgcgcaagcggcaaagcgcaggcgcatttttagcgaaagccaccatgtccgac
acagcaaccacgcctaccaacgcgaccttcgaccagttcggcctgcatgccgacattctc
aaagccatcgcggaacagggctacacgacgccgacgccgatccaggccgaggcgatccct
gtcgtactgggcggccgggacgtgatgggcgccgcgcagaccgggacgggcaagacggcc
ggtttctcgctgccgatcatccagcgtctgttgccgctcgccagcacgagcgcctcgccg
gcccgccacccggtccgcgcgctgatcctcacgccgacacgcgaactcgccgaccaggtc
gccgccaacgtgcaggcgtacgccaaacacacgtcgctgcgcagcgctgtcgtgttcggc
ggcgtcgacatgaatccgcagtccgcggaactgcggcgcggcgtcgaaatcctgatcgcg
acgccgggacgtctgctcgatcacgtgcagcagaaaacggccaatctcggccaggtgcag
atgctcgtgctcgacgaagccgaccggatgctcgacatgggcttcctgcccgacttgcag
cgcatcctgaacctgcttcccgccgagcgtcagacgctgctgttctcggcaacgttctcg
ccggaaatcaagaagctggcggccacgtatctgcgcaatccgcagacgatcgaagtggcg
cgcagcaattcgacggcgaccaacgtcacgcagatcgtctacgaagtggccgagggcgac
aagacgggcgccgtcgtgaaactgatccgcgagcgtggcctcaagcaggtgatcgtgttc
tgcaacagcaagatcggagcgagccgtctcgcgcgtcagttggagcgcgacggcgtggtc
gccaccgcgattcacggcgaccgcacgcagagcgaacggatgcaggcgctcgacgctttc
aagcgcggcgagatcgaggcgctggtcgcgacggacgtggcggcgcgcggtctcgatatt
gccgagttgcccgccgtgatcaacttcgatctgccgttcaacgcggaagactacgtgcac
cggatcggccggacgggccgtgcgggcgcatcgggcgacgcgctgtcgctgttcagtccg
aacgagcgcaagcagcttgccgacatcgagaagctgatcaagcggccgctcgacgtgcag
cgcctgaccgtcgatacccccgtgcgtcaccatcacgacgagcgcggcgcgcggcgcgaa
cgcgacgatcgcggcagccgccgccgtacgacgggcgcgcacgagcgtccggcgcacggg
acgcatcatcgtcagcaacctgtcgatgatttcttcctgaagccgtatgagccgtcgcct
tcggcggtctcggctgccgcgaagcgcgacgaagcgcccgccgcgccgcagaagccgacg
tcgaagcagccgctcgctgcgctgctgggtggcttcggcatgccgcgcaagacgacgccc
tcgaactga
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